RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PRR23BQ6ZRT6 265 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 GAREM2Q75VX8 874 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 LONP2Q86WA8 852 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 SYNPOQ8N3V7 929 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 ATAD1Q8NBU5 361 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 NETO1Q8TDF5 533 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 INTS4Q96HW7 963 aaKnown RBP13.57□□□□□ -0.24
TRIM28-212ENST00000597995 CDK5RAP3Q96JB5 506 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 SENP8Q96LD8 212 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 AK8Q96MA6 479 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 ATXN3LQ9H3M9 355 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 BLOC1S4Q9NUP1 217 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 SLC27A5Q9Y2P5 690 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 A0A0B4J269 797 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 DCDC2BA2VCK2 349 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 SLC38A8A6NNN8 435 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CHURC1-FNTBB4DL54 471 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 K7ELQ4 463 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-212ENST00000597995 K7ESF4 209 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 SLC30A4O14863 429 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 HNRNPDLO14979 420 aaKnown RBP13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CYP11A1P05108 521 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 ODC1P11926 461 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 GABRR2P28476 465 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 ABCD1P33897 745 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 FNTBP49356 437 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 TUFMP49411 452 aaKnown RBP13.56□□□□□ -0.24
TRIM28-212ENST00000597995 PLCB2Q00722 1185 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CACNB1Q02641 598 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CSRP2Q16527 193 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 LPAL2Q16609 132 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 STXBP5Q5T5C0 1151 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 USP49Q70CQ1 688 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 TMEM130Q8N3G9 435 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 FAM200AQ8TCP9 573 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CNTNAP3BQ96NU0 1288 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 LRRC3BQ96PB8 259 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 CNTNAP3Q9BZ76 1288 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 RBM12Q9NTZ6 932 aaKnown RBP13.56□□□□□ -0.24
TRIM28-212ENST00000597995 ZMYM5Q9UJ78 669 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 TBX20Q9UMR3 447 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 MTMR6Q9Y217 621 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 DERAQ9Y315 318 aa13.56□□□□□ -0.24
TRIM28-212ENST00000597995 ACACBO00763 2458 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 ANO9A1A5B4 782 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 PIRO00625 290 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 PLCG1P19174 1290 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 PDCP20941 246 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 LONP1P36776 959 aaKnown RBP13.55□□□□□ -0.24
TRIM28-212ENST00000597995 SOX9P48436 509 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 GUCY2FP51841 1108 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 ZNF131P52739 623 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 SMARCB1Q12824 385 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 VEPH1Q14D04 833 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 KARSQ15046 597 aaKnown RBP13.55□□□□□ -0.24
TRIM28-212ENST00000597995 WDR44Q5JSH3 913 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 GPR158Q5T848 1215 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 TXNDC11Q6PKC3 985 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 BPIFB1Q8TDL5 484 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 REEP2Q9BRK0 252 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 ASB7Q9H672 318 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 TASP1Q9H6P5 420 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 SEMA4GQ9NTN9 838 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 CPSF3Q9UKF6 684 aaKnown RBP13.55□□□□□ -0.24
TRIM28-212ENST00000597995 DSEQ9UL01 958 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.55□□□□□ -0.24
TRIM28-212ENST00000597995 EPG5Q9HCE0 2579 aa13.55□□□□□ -0.24
TRIM28-212ENST00000597995 PPEF2O14830 753 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 BMP15O95972 392 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 ADRB1P08588 477 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 CDC25CP30307 473 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 UBA7P41226 1012 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 POU5F1Q01860 360 aaKnown RBP13.54□□□□□ -0.24
TRIM28-212ENST00000597995 DMWDQ09019 674 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 CCINQ13939 588 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 MCM6Q14566 821 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 C9orf57Q5W0N0 161 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 JADE1Q6IE81 842 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 PRR23CQ6ZRP0 262 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 Q6ZS52 159 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-212ENST00000597995 WDR5BQ86VZ2 330 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 GPIHBP1Q8IV16 184 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 MYCT1Q8N699 235 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 TTC9BQ8N6N2 239 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 C2orf15Q8WU43 125 aaKnown RBP13.54□□□□□ -0.24
TRIM28-212ENST00000597995 SNX21Q969T3 373 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 CALML4Q96GE6 196 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 EPSTI1Q96J88 318 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 TMEM209Q96SK2 561 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 MSTO1Q9BUK6 570 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 ZCWPW1Q9H0M4 648 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 PARVGQ9HBI0 331 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 THG1LQ9NWX6 298 aaKnown RBP13.54□□□□□ -0.24
TRIM28-212ENST00000597995 GTSE1Q9NYZ3 720 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 FBXO2Q9UK22 296 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-212ENST00000597995 GTF3C3Q9Y5Q9 886 aa13.54□□□□□ -0.24
TRIM28-212ENST00000597995 NUP210Q8TEM1 1887 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-212ENST00000597995 RALGAPA1Q6GYQ0 2036 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms