RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RAB3IPQ96QF0 476 aaPredicted RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 MSTO1Q9BUK6 570 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 METTL5Q9NRN9 209 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 NXF1Q9UBU9 619 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 OAS1P00973 400 aaKnown RBP16.09■□□□□ 0.17
UPF1-204ENST00000596842 SLC1A1P43005 524 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 CAV1Q03135 178 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 OR5B17Q8NGF7 314 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 DEPTORQ8TB45 409 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 CCHCR1Q8TD31 782 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 LRRN4Q8WUT4 740 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 FAM151AQ8WW52 585 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 ZFP69BQ9UJL9 534 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 MUTP22033 750 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 CPA2P48052 419 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 MTMR2Q13614 643 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 TNFAIP8L3Q5GJ75 292 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 SLC30A9Q6PML9 568 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 C4orf19Q8IY42 314 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 SCYL3Q8IZE3 742 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 CLEC4DQ8WXI8 215 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 PDCD2LQ9BRP1 358 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 ARHGEF3Q9NR81 526 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 GRID1Q9ULK0 1009 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 RIPK3Q9Y572 518 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 ATAD5Q96QE3 1844 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 ZNF536O15090 1300 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 AHDC1Q5TGY3 1603 aaPredicted RBP16.09■□□□□ 0.17
UPF1-204ENST00000596842 K7ERI5 159 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 ASNSP08243 561 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 GALNTL6Q49A17 601 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 SLC27A3Q5K4L6 730 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 APBB1IPQ7Z5R6 666 aaPredicted RBP16.09■□□□□ 0.17
UPF1-204ENST00000596842 TRABD2AQ86V40 505 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 CTAGE3PQ8IX95 158 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 BBOF1Q8ND07 529 aa16.09■□□□□ 0.17
UPF1-204ENST00000596842 L3MBTL3Q96JM7 780 aaPredicted RBP16.09■□□□□ 0.17
UPF1-204ENST00000596842 APOBEC3GQ9HC16 384 aaKnown RBP16.09■□□□□ 0.17
UPF1-204ENST00000596842 KRT19P08727 400 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 PRKCEQ02156 737 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 CUL2Q13617 745 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 PRKG1Q13976 671 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 FEZF2Q8TBJ5 459 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 MAGEC3Q8TD91 643 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 MAK16Q9BXY0 300 aaKnown RBP16.08■□□□□ 0.17
UPF1-204ENST00000596842 SUDS3Q9H7L9 328 aaPredicted RBP16.08■□□□□ 0.17
UPF1-204ENST00000596842 NUB1Q9Y5A7 615 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 IKBKGQ9Y6K9 419 aa16.08■□□□□ 0.17
UPF1-204ENST00000596842 TJP3O95049 919 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 BPIFB4P59827 614 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 TLDC1Q6P9B6 456 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 C3orf62Q6ZUJ4 267 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CENPUQ71F23 418 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 EEPD1Q7L9B9 569 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 EMC1Q8N766 993 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 ANKLE1Q8NAG6 615 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 RSAD2Q8WXG1 361 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 ATG4CQ96DT6 458 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 FAM81BQ96LP2 452 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 SENP7Q9BQF6 1050 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 TBC1D10AQ9BXI6 508 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CALN1Q9BXU9 219 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 EBF2Q9HAK2 575 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 FBXO40Q9UH90 709 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 UBIAD1Q9Y5Z9 338 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 PYGLP06737 847 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CENPCQ03188 943 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 FYB2Q5VWT5 728 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CRELD2Q6UXH1 353 aaPredicted RBP16.08■□□□□ 0.16
UPF1-204ENST00000596842 KRT27Q7Z3Y8 459 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CCDC60Q8IWA6 550 aaPredicted RBP16.08■□□□□ 0.16
UPF1-204ENST00000596842 C12orf56Q8IXR9 622 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 RNF146Q9NTX7 359 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 CHMP2BQ9UQN3 213 aa16.08■□□□□ 0.16
UPF1-204ENST00000596842 ZBED4O75132 1171 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 MAPTP10636 758 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 TFAMQ00059 246 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 HIF1AQ16665 826 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 UTP4Q969X6 686 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 TRIM11Q96F44 468 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 MOV10L1Q9BXT6 1211 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 NR3C2P08235 984 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 GCLCP48506 637 aaPredicted RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 HSD17B4P51659 736 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 JAK3P52333 1124 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 NOMO3P69849 1222 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 KRT76Q01546 638 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 GCNT1Q02742 428 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 SYDE1Q6ZW31 735 aaPredicted RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 MON1BQ7L1V2 547 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 ZC3H18Q86VM9 953 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 HSPH1Q92598 858 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 DNALI1O14645 258 aaPredicted RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 LIASO43766 372 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 MKRN3Q13064 507 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 RIPK1Q13546 671 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 MUM1Q2TAK8 710 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 NLRP9Q7RTR0 991 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 CCDC125Q86Z20 511 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 ABRAQ8N0Z2 381 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms