RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZC3H3Q8IXZ2 948 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 TCEAL8Q8IYN2 117 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 PDCL2Q8N4E4 241 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 SLC7A14Q8TBB6 771 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 NELFBQ8WX92 580 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 SMG7Q92540 1137 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 NR2E1Q9Y466 385 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 XIRP2A4UGR9 3374 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 PLXNA3P51805 1871 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 TRIM49BA6NDI0 452 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 C19orf67A6NJJ6 358 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 STX10O60499 249 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 XYLBO75191 536 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 WEE2P0C1S8 567 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 SSTR3P32745 418 aaPredicted RBP16.13■□□□□ 0.17
UPF1-202ENST00000594243 MYL6P60660 151 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 MYL7Q01449 175 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 ZP2Q05996 745 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 ADCY1Q08828 1119 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 NCOA4Q13772 614 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 SOWAHAQ2M3V2 549 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 SGSM1Q2NKQ1 1148 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 WDR72Q3MJ13 1102 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 ZACNQ401N2 412 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 RNF19BQ6ZMZ0 732 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 SV2AQ7L0J3 742 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 FILIP1Q7Z7B0 1213 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 DCP1BQ8IZD4 617 aaKnown RBP16.13■□□□□ 0.17
UPF1-202ENST00000594243 GJD3Q8N144 294 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 EEF2KMTQ96G04 330 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 CEP63Q96MT8 703 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 NECAB3Q96P71 396 aaPredicted RBP16.13■□□□□ 0.17
UPF1-202ENST00000594243 MMS19Q96T76 1030 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 ACBD6Q9BR61 282 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 ZCWPW1Q9H0M4 648 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 POMKQ9H5K3 350 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 DDX43Q9NXZ2 648 aaKnown RBP16.13■□□□□ 0.17
UPF1-202ENST00000594243 L1RE1Q9UN81 338 aa16.13■□□□□ 0.17
UPF1-202ENST00000594243 GABRDO14764 452 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 LRG1P02750 347 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 POU2F2P09086 479 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 OR4Q2P0C623 313 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 GTF2H1P32780 548 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 TNNC1P63316 161 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 PAK1Q13153 545 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 C1orf220Q5T0J3 134 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 ADGRF2Q8IZF7 708 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 MLKLQ8NB16 471 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 OR10T2Q8NGX3 314 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 C2orf15Q8WU43 125 aaKnown RBP16.12■□□□□ 0.17
UPF1-202ENST00000594243 TAF4BQ92750 862 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 ZNF707Q96C28 371 aaPredicted RBP16.12■□□□□ 0.17
UPF1-202ENST00000594243 RPGRIP1Q96KN7 1286 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 VRTNQ9H8Y1 702 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 METTL14Q9HCE5 456 aaKnown RBP16.12■□□□□ 0.17
UPF1-202ENST00000594243 WDR6Q9NNW5 1121 aaKnown RBP16.12■□□□□ 0.17
UPF1-202ENST00000594243 HSFX1Q9UBD0 423 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 CDH22Q9UJ99 828 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 CTNND2Q9UQB3 1225 aa16.12■□□□□ 0.17
UPF1-202ENST00000594243 LOC730098B7Z3J9 87 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 TNFRSF10AO00220 468 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 CCL16O15467 120 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 CLSTN1O94985 981 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 SEC24AO95486 1093 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 FGFR1OPO95684 399 aaKnown RBP16.11■□□□□ 0.17
UPF1-202ENST00000594243 MBD3O95983 291 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 P4HA1P13674 534 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 TSPY1Q01534 308 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 ZNF699Q32M78 642 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 SLC39A12Q504Y0 691 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 ZNF667Q5HYK9 610 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 KRT39Q6A163 491 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 TTI2Q6NXR4 508 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 LIMS2Q7Z4I7 341 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 GPT2Q8TD30 523 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 PGLYRP2Q96PD5 576 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 TMEM209Q96SK2 561 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 DUSP9Q99956 384 aaKnown RBP16.11■□□□□ 0.17
UPF1-202ENST00000594243 RTP3Q9BQQ7 232 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 XYLT2Q9H1B5 865 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 TMEM8AQ9HCN3 771 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 NXF1Q9UBU9 619 aaKnown RBP16.11■□□□□ 0.17
UPF1-202ENST00000594243 ARMCX3Q9UH62 379 aaPredicted RBP16.11■□□□□ 0.17
UPF1-202ENST00000594243 POLIQ9UNA4 740 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 USTQ9Y2C2 406 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 MTCL1Q9Y4B5 1905 aaKnown RBP16.11■□□□□ 0.17
UPF1-202ENST00000594243 BRWD1Q9NSI6 2320 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 SCN1AP35498 2009 aa16.11■□□□□ 0.17
UPF1-202ENST00000594243 MTMR11A4FU01 709 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 TACC1O75410 805 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 VNN1O95497 513 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 GNA14O95837 355 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 TRIM49P0CI25 452 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 TRIM49CP0CI26 452 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 PTPN2P17706 415 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 WARSP23381 471 aaKnown RBP16.1■□□□□ 0.17
UPF1-202ENST00000594243 PCSK1P29120 753 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 GCLMP48507 274 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 TUFMP49411 452 aaKnown RBP16.1■□□□□ 0.17
UPF1-202ENST00000594243 PPP3CAQ08209 521 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms