RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ZDBF2Q9HCK1 2354 aa16.45■□□□□ 0.22
TRIM28-203ENST00000593582 CLIC2O15247 247 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 HUS1O60921 280 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 CEBPBP17676 345 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 CLCN5P51795 746 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 NDUFA8P51970 172 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 SMARCB1Q12824 385 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 BFSP1Q12934 665 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 MYO1EQ12965 1108 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 PSMD2Q13200 908 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 PRSS36Q5K4E3 855 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 LMBRD2Q68DH5 695 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-203ENST00000593582 WDR49Q8IV35 697 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 XXYLT1Q8NBI6 393 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 RDH13Q8NBN7 331 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 FLCNQ8NFG4 579 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 CXorf38Q8TB03 319 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 GOLGA5Q8TBA6 731 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 TCEAL4Q96EI5 215 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 FNBP1Q96RU3 617 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 RTP3Q9BQQ7 232 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 RPP25Q9BUL9 199 aaKnown RBP16.44■□□□□ 0.22
TRIM28-203ENST00000593582 CRISPLD1Q9H336 500 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 SLC2A4RGQ9NR83 387 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 ZNF318Q5VUA4 2279 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 MUC6Q6W4X9 2439 aa16.44■□□□□ 0.22
TRIM28-203ENST00000593582 FAM237AA0A1B0GTK4 181 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 A0A1W2PQ27 194 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 A0A1W2PQ64 194 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 A0A1W2PQD8 194 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 KLRC4O43908 158 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 PRPF40AO75400 957 aaKnown RBP16.43■□□□□ 0.22
TRIM28-203ENST00000593582 DLATP10515 647 aaKnown RBP16.43■□□□□ 0.22
TRIM28-203ENST00000593582 MYL4P12829 197 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 RFX1P22670 979 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 TUFMP49411 452 aaKnown RBP16.43■□□□□ 0.22
TRIM28-203ENST00000593582 NUBP1P53384 320 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 EPHA5P54756 1037 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 KMT5BQ4FZB7 885 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 DCP1BQ8IZD4 617 aaKnown RBP16.43■□□□□ 0.22
TRIM28-203ENST00000593582 HS6ST3Q8IZP7 471 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 TMEM86AQ8N2M4 240 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 PDCL2Q8N4E4 241 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 FSIP1Q8NA03 581 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 OR5B17Q8NGF7 314 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 GPR152Q8TDT2 470 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 C2orf15Q8WU43 125 aaKnown RBP16.43■□□□□ 0.22
TRIM28-203ENST00000593582 FAM84AQ96KN4 292 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 KXD1Q9BQD3 176 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 GDAP2Q9NXN4 497 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 SIX4Q9UIU6 781 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 CA14Q9ULX7 337 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 ASB3Q9Y575 518 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 SNX9Q9Y5X1 595 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 DOCK6Q96HP0 2047 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 PTPRJQ12913 1337 aa16.43■□□□□ 0.22
TRIM28-203ENST00000593582 SCN1AP35498 2009 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 STK25O00506 426 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 ECI2O75521 394 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 RPN1P04843 607 aaKnown RBP16.42■□□□□ 0.22
TRIM28-203ENST00000593582 TNNI1P19237 187 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 CCR2P41597 374 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 PTPN5P54829 565 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 TSPY1Q01534 308 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 STK4Q13043 487 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 MGAT5BQ3V5L5 792 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 ITIH5Q86UX2 942 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 C12orf56Q8IXR9 622 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 TMEM105Q8N8V8 129 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 PRSS33Q8NF86 280 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 CCDC47Q96A33 483 aaKnown RBP16.42■□□□□ 0.22
TRIM28-203ENST00000593582 CCDC127Q96BQ5 260 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 HPDLQ96IR7 371 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 SEPT5Q99719 369 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-203ENST00000593582 DNAJC25Q9H1X3 360 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 ARHGEF3Q9NR81 526 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 L1RE1Q9UN81 338 aa16.42■□□□□ 0.22
TRIM28-203ENST00000593582 KRBA1A5PL33 1030 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 EXOC3O60645 756 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 SOAT2O75908 522 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 NPR3P17342 541 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 GPC5P78333 572 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 NUCB2P80303 420 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 MYL7Q01449 175 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 NHLH1Q02575 133 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 CYP24A1Q07973 514 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 VEPH1Q14D04 833 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 PSMD6Q15008 389 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 NFE2Q16621 373 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-203ENST00000593582 CWF19L1Q69YN2 538 aaKnown RBP16.41■□□□□ 0.22
TRIM28-203ENST00000593582 SCARA3Q6AZY7 606 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 DNAJB7Q7Z6W7 309 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-203ENST00000593582 LRRTM3Q86VH5 581 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 TTC9BQ8N6N2 239 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 TOP6BLQ8N6T0 577 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 KIAA0895Q8NCT3 520 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 SPATA18Q8TC71 538 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 FAM200AQ8TCP9 573 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 SPPL2BQ8TCT7 592 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 PSMG2Q969U7 264 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms