RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 IGFBP4P22692 258 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 SERPINB6P35237 376 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 HARS2P49590 506 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 CDH6P55285 790 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 TTC30AQ86WT1 665 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 P3H4Q92791 437 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 RSRC1Q96IZ7 334 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.37□□□□□ -0.753e-10■■□□□ 11.4
LIG3-216ENST00000593099 KLHL8Q9P2G9 620 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 BARX2Q9UMQ3 279 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 HEY1Q9Y5J3 304 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 CASZ1Q86V15 1759 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 EFCAB8A8MWE9 144 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 ZFXP17010 805 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 CCND3P30281 292 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 CXCR5P32302 372 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 EPC2Q52LR7 807 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 DCAF6Q58WW2 860 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 NT5DC1Q5TFE4 455 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 FBXO46Q6PJ61 603 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 SLC24A5Q71RS6 500 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 AFAP1L1Q8TED9 768 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 SYN2Q92777 582 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 HHIPL1Q96JK4 782 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 TRPV6Q9H1D0 765 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 DHX33Q9H6R0 707 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 SP110Q9HB58 689 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 PLCB1Q9NQ66 1216 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 FOXN3O00409 490 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 HEXIM1O94992 359 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 CKMP06732 381 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 ARF4P18085 180 aaPredicted RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 SLC1A1P43005 524 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 GALCP54803 685 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 TPI1P60174 286 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 BASP1P80723 227 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 ACCSLQ4AC99 568 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 EEF1DP3Q658K8 133 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 RBM43Q6ZSC3 357 aaKnown RBP10.37□□□□□ -0.75
LIG3-216ENST00000593099 TMEM176AQ96HP8 235 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 SENP8Q96LD8 212 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 NKIRAS1Q9NYS0 192 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 PGAP2Q9UHJ9 254 aa10.37□□□□□ -0.75
LIG3-216ENST00000593099 ZNF862O60290 1169 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 GRM5P41594 1212 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TM4SF4P48230 202 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 FXR1P51114 621 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIG3-216ENST00000593099 NCKAP1LP55160 1127 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 MDH1BQ5I0G3 518 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TMEM86AQ8N2M4 240 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 CDKL2Q92772 493 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 MBOAT7Q96N66 472 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TSEN34Q9BSV6 310 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 WNT8AQ9H1J5 351 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 IRAK4Q9NWZ3 460 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 MYH2Q9UKX2 1941 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SF3B1O75533 1304 aaKnown RBP eCLIP10.36□□□□□ -0.753e-9■■■■■ 206.8
LIG3-216ENST00000593099 GIPC1O14908 333 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 GRAP2O75791 330 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 NCAM1P13591 858 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 PLD1Q13393 1074 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 ORC1Q13415 861 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 PIGHQ14442 188 aaPredicted RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 CST9Q5W186 159 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 ZNF449Q6P9G9 518 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 HDXQ7Z353 690 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SLC7A14Q8TBB6 771 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 PXYLP1Q8TE99 480 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 UNC93B1Q9H1C4 597 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 MRPL17Q9NRX2 175 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 B4GALT5O43286 388 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 IRF1P10914 325 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SLC2A3P11169 496 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TUFMP49411 452 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 ST8SIA6P61647 398 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 KCNA1Q09470 495 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 GRIK3Q13003 919 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SPOPLQ6IQ16 392 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 C1orf131Q8NDD1 294 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 LPPQ93052 612 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 HEMGNQ9BXL5 484 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SLC28A3Q9HAS3 691 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 KRT82Q9NSB4 513 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 ZMYND8Q9ULU4 1186 aaPredicted RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 ADGRG1Q9Y653 693 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SLX4Q8IY92 1834 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 CNTNAP2Q9UHC6 1331 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 NEMP1O14524 444 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 RIOK3O14730 519 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 SRGAP2O75044 1071 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 XYLBO75191 536 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 SLC4A1P02730 911 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 RPL9P32969 192 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 RAP1GAPP47736 663 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 CLNS1AP54105 237 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 DENND2CQ68D51 928 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 LRRC43Q8N309 656 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TSPAN18Q96SJ8 248 aa10.36□□□□□ -0.75
LIG3-216ENST00000593099 TRMT13Q9NUP7 481 aaKnown RBP10.36□□□□□ -0.75
LIG3-216ENST00000593099 TISP43B9A030 160 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms