RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 ITGA11Q9UKX5 1188 aa10.36□□□□□ -0.75
DDX39A-220ENST00000593008 HCFC2Q9Y5Z7 792 aa10.36□□□□□ -0.75
DDX39A-220ENST00000593008 VWA8A3KMH1 1905 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 FAM170AA1A519 330 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 GOLGA6L3A6NEY3 463 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 LRRC10BA6NIK2 292 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 MBTPS2O43462 519 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 B3GAT3O94766 335 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 NOL4O94818 638 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 ASS1P00966 412 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 SOD2P04179 222 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 URODP06132 367 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 CNPP09543 421 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 EPCAMP16422 314 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 KLRC2P26717 231 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 TKTP29401 623 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 SSTR3P32745 418 aaPredicted RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 GTF2H1P32780 548 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 PBX1P40424 430 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 GLUD2P49448 558 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 CDH8P55286 799 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 UBASH3AP57075 661 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 RBP5P82980 135 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 POU5F1Q01860 360 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 SMAD4Q13485 552 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 TRPC3Q13507 836 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 KCNC3Q14003 757 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 PUS10Q3MIT2 529 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 IQCEQ6IPM2 695 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 KIAA1841Q6NSI8 718 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 PHLDB3Q6NSJ2 640 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 ANKRD54Q6NXT1 300 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 FUT10Q6P4F1 479 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 TRIM65Q6PJ69 517 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 RRAGAQ7L523 313 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 C12orf76Q8N812 135 aaPredicted RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 SMRP1Q8NCR6 262 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 FBXL13Q8NEE6 735 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 KREMEN1Q96MU8 473 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 TWNKQ96RR1 684 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 MRPL45Q9BRJ2 306 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 HERC2P3Q9BVR0 1158 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 GANQ9H2C0 597 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 MRPL17Q9NRX2 175 aaKnown RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 SLC38A7Q9NVC3 462 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 RAB20Q9NX57 234 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 CDH22Q9UJ99 828 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 ADAM28Q9UKQ2 775 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 L1RE1Q9UN81 338 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 COQ4Q9Y3A0 265 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 USP15Q9Y4E8 981 aaPredicted RBP10.35□□□□□ -0.75
DDX39A-220ENST00000593008 FHOD1Q9Y613 1164 aa10.35□□□□□ -0.75
DDX39A-220ENST00000593008 EFEMP2O95967 443 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 WEE2P0C1S8 567 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SRGAP2BP0DMP2 458 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 CD58P19256 250 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 TAF6P49848 677 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 LILRA4P59901 499 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 ENPEPQ07075 957 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SMAD2Q15796 467 aaKnown RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 EXOC3L4Q17RC7 722 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 RTP2Q5QGT7 225 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 WSCD1Q658N2 575 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 E4F1Q66K89 784 aaPredicted RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SYCE2Q6PIF2 218 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SARM1Q6SZW1 724 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 GBP6Q6ZN66 633 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 CEP57Q86XR8 500 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 NT5DC4Q86YG4 428 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 GLYCTKQ8IVS8 523 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 RNF168Q8IYW5 571 aaPredicted RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 EHBP1Q8NDI1 1231 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 ANKRD20A12PQ8NF67 263 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 FEZF2Q8TBJ5 459 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 CACTINQ8WUQ7 758 aaKnown RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 KBTBD7Q8WVZ9 684 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 RIN2Q8WYP3 895 aaPredicted RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 CASP10Q92851 521 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SENP8Q96LD8 212 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 KLHL5Q96PQ7 755 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 RTP3Q9BQQ7 232 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 EMILIN2Q9BXX0 1053 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 TRIM5Q9C035 493 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 ACP6Q9NPH0 428 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 FAM50BQ9Y247 325 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SNX9Q9Y5X1 595 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 IRAK3Q9Y616 596 aa10.34□□□□□ -0.75
DDX39A-220ENST00000593008 SF3B1O75533 1304 aaKnown RBP eCLIP10.33□□□□□ -0.767e-10■■■■□ 23
DDX39A-220ENST00000593008 TEX28O15482 410 aa10.33□□□□□ -0.76
DDX39A-220ENST00000593008 XPOTO43592 962 aaKnown RBP10.33□□□□□ -0.76
DDX39A-220ENST00000593008 STX10O60499 249 aa10.33□□□□□ -0.76
DDX39A-220ENST00000593008 LILRB3O75022 631 aa10.33□□□□□ -0.76
DDX39A-220ENST00000593008 N4BP1O75113 896 aaKnown RBP10.33□□□□□ -0.76
DDX39A-220ENST00000593008 ADCY5O95622 1261 aa10.33□□□□□ -0.76
DDX39A-220ENST00000593008 SPATA31D3P0C874 917 aa10.33□□□□□ -0.76
DDX39A-220ENST00000593008 RPL17P18621 184 aaKnown RBP10.33□□□□□ -0.76
DDX39A-220ENST00000593008 SP100P23497 879 aaPredicted RBP10.33□□□□□ -0.76
DDX39A-220ENST00000593008 ACAT1P24752 427 aaKnown RBP10.33□□□□□ -0.76
DDX39A-220ENST00000593008 AARSP49588 968 aaKnown RBP eCLIP10.33□□□□□ -0.762e-6■■■■■ 30.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms