RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 GUCD1Q96NT3 240 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 NT5C1BQ96P26 610 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 TMEM209Q96SK2 561 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 CDX2Q99626 313 aaPredicted RBP11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 ARID3AQ99856 593 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 BCO2Q9BYV7 579 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 NIF3L1Q9GZT8 377 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 NGRNQ9NPE2 291 aaKnown RBP11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 MRPL17Q9NRX2 175 aaKnown RBP11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 STK39Q9UEW8 545 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 IRAK3Q9Y616 596 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 MTCH2Q9Y6C9 303 aa11.47□□□□□ -0.57
SMARCA4-213ENST00000587988 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 GABRDO14764 452 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 TACC1O75410 805 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 CNPP09543 421 aaKnown RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 IGFBP4P22692 258 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 WARSP23381 471 aaKnown RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 ACAT1P24752 427 aaKnown RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 UBASH3AP57075 661 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 NR1I3Q14994 352 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 PTPROQ16827 1216 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 CTXN3Q4LDR2 81 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 FKBP15Q5T1M5 1219 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 ANKS3Q6ZW76 656 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 METTL23Q86XA0 190 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 TMEM86AQ8N2M4 240 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 PPM1KQ8N3J5 372 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 OR10T2Q8NGX3 314 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 MYLIPQ8WY64 445 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 KREMEN1Q96MU8 473 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 KLHL5Q96PQ7 755 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 CLSTN3Q9BQT9 956 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 LSM14BQ9BX40 385 aaKnown RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 RXFP1Q9HBX9 757 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 MTMR10Q9NXD2 777 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 DDX43Q9NXZ2 648 aaKnown RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 IFNKQ9P0W0 207 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 MTRRQ9UBK8 725 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 FBXL5Q9UKA1 691 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 AJAP1Q9UKB5 411 aaPredicted RBP11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 DSEQ9UL01 958 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 SIK3Q9Y2K2 1263 aa11.46□□□□□ -0.57
SMARCA4-213ENST00000587988 SZT2Q5T011 3432 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 ARHGEF37A1IGU5 675 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 PER2O15055 1255 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 EPHB6O15197 1021 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 TEX28O15482 410 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 NOL4O94818 638 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 PDGFRBP09619 1106 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 FAM163BP0C2L3 166 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 OR4Q2P0C623 313 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 P4HA1P13674 534 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CD58P19256 250 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 POU3F3P20264 500 aaPredicted RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 GTF2F1P35269 517 aaKnown RBP eCLIP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 GNL1P36915 607 aaPredicted RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 LHX1P48742 406 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CDR1P51861 262 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CUL2Q13617 745 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 BMS1Q14692 1282 aaKnown RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 SYCP1Q15431 976 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CCDC142Q17RM4 750 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 FILIP1LQ4L180 1135 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 PDE12Q6L8Q7 609 aaKnown RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 ZNF280DQ6N043 979 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 RBM23Q86U06 439 aaKnown RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 LRRTM3Q86VH5 581 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 GPR65Q8IYL9 337 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 UBR7Q8N806 425 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 OR6B3Q8NGW1 331 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 ERGIC2Q96RQ1 377 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 LPIN3Q9BQK8 851 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 XPO4Q9C0E2 1151 aaKnown RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CYP3A43Q9HB55 503 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 UBE2TQ9NPD8 197 aaPredicted RBP11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 LMCD1Q9NZU5 365 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 FNIP2Q9P278 1114 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 HMGXB4Q9UGU5 601 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 SSX2IPQ9Y2D8 614 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 BACE2Q9Y5Z0 518 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 CDY1Q9Y6F8 540 aa11.45□□□□□ -0.58
SMARCA4-213ENST00000587988 H7C4K7 107 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 CLASP2O75122 1294 aaKnown RBP11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 ATP2C2O75185 946 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 OR1D2P34982 312 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 NDST1P52848 882 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 ARPP19P56211 112 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 RBM10P98175 930 aaKnown RBP11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 PLCB2Q00722 1185 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 ORC1Q13415 861 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 TCEAL5Q5H9L2 206 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 KLHDC7AQ5VTJ3 777 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 SLC8B1Q6J4K2 584 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 PDXDC1Q6P996 788 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 PALB2Q86YC2 1186 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 THEM5Q8N1Q8 247 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 SPATA18Q8TC71 538 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 WHAMMQ8TF30 809 aa11.44□□□□□ -0.58
SMARCA4-213ENST00000587988 FAXDC2Q96IV6 333 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms