RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 TMEM174Q8WUU8 243 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 ING5Q8WYH8 240 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 NXPE3Q969Y0 559 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 ZNF560Q96MR9 790 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 PKMYT1Q99640 499 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 DMAC2Q9NW81 257 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 GDAP2Q9NXN4 497 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 DSEQ9UL01 958 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 L1RE1Q9UN81 338 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 COL4A2P08572 1712 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 MYL1P05976 194 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 PTPN2P17706 415 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 FCARP24071 287 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 PNPLA4P41247 253 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 CYP2J2P51589 502 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 PSMD6Q15008 389 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 KRBA2Q6ZNG9 492 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 OSTM1Q86WC4 334 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 PDCL2Q8N4E4 241 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 CSGALNACT2Q8N6G5 542 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 NOC3LQ8WTT2 800 aaKnown RBP16.34■□□□□ 0.21
CLIP3-202ENST00000585466 CACTINQ8WUQ7 758 aaKnown RBP16.34■□□□□ 0.21
CLIP3-202ENST00000585466 CORO1BQ9BR76 489 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 KIAA1586Q9HCI6 787 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 TMLHEQ9NVH6 421 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 HSFX1Q9UBD0 423 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 SLC27A5Q9Y2P5 690 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 MRPS23Q9Y3D9 190 aaKnown RBP16.34■□□□□ 0.21
CLIP3-202ENST00000585466 DENND4CQ5VZ89 1909 aa16.34■□□□□ 0.21
CLIP3-202ENST00000585466 OBSL1O75147 1896 aa16.33■□□□□ 0.21
CLIP3-202ENST00000585466 PTPRDP23468 1912 aa16.33■□□□□ 0.21
CLIP3-202ENST00000585466 KRBA1A5PL33 1030 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 HCRTO43612 131 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 SOAT2O75908 522 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 MICAL2O94851 1124 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 RPN1P04843 607 aaKnown RBP16.33■□□□□ 0.2
CLIP3-202ENST00000585466 SRFP11831 508 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 CDR1P51861 262 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 PSMD2Q13200 908 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 CCDC142Q17RM4 750 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 SLC39A12Q504Y0 691 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 WDR49Q8IV35 697 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 XXYLT1Q8NBI6 393 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 PRSS33Q8NF86 280 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 ZNF516Q92618 1163 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 CGRRF1Q99675 332 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 SLC2A4RGQ9NR83 387 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 EXOC1Q9NV70 894 aa16.33■□□□□ 0.2
CLIP3-202ENST00000585466 CGNQ9P2M7 1197 aaKnown RBP16.33■□□□□ 0.2
CLIP3-202ENST00000585466 NCANO14594 1321 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 GABRDO14764 452 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 RHOBTB3O94955 611 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 ZNF202O95125 648 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 TMEM191BP0C7N4 346 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 ATF6P18850 670 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 AVPR2P30518 371 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 RBP5P82980 135 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 BFSP1Q12934 665 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 SURF1Q15526 300 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 SOWAHAQ2M3V2 549 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 HS2ST1Q7LGA3 356 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 FMR1NBQ8N0W7 255 aaPredicted RBP16.32■□□□□ 0.2
CLIP3-202ENST00000585466 TMEM105Q8N8V8 129 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 RDH13Q8NBN7 331 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 SHKBP1Q8TBC3 707 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 KBTBD7Q8WVZ9 684 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 FAM122AQ96E09 287 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 ZSWIM3Q96MP5 696 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 PLA2G2FQ9BZM2 168 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 KCNH6Q9H252 994 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 ZNF334Q9HCZ1 680 aaPredicted RBP16.32■□□□□ 0.2
CLIP3-202ENST00000585466 GDE1Q9NZC3 331 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 PIEZO1Q92508 2521 aa16.32■□□□□ 0.2
CLIP3-202ENST00000585466 CFHP08603 1231 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 CLDN10P78369 228 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 SNW1Q13573 536 aaKnown RBP16.31■□□□□ 0.2
CLIP3-202ENST00000585466 DUOXA2Q1HG44 320 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 MTSS1LQ765P7 747 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 TRAPPC11Q7Z392 1133 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 METTL23Q86XA0 190 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 SLC9A9Q8IVB4 645 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 SUGP1Q8IWZ8 645 aaKnown RBP16.31■□□□□ 0.2
CLIP3-202ENST00000585466 TOP6BLQ8N6T0 577 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 ENGASEQ8NFI3 743 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 GPR152Q8TDT2 470 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 MCRS1Q96EZ8 462 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 ANKRD36BP1Q96IX9 119 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 KXD1Q9BQD3 176 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 MKNK1Q9BUB5 465 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 WNT16Q9UBV4 365 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 NME7Q9Y5B8 376 aa16.31■□□□□ 0.2
CLIP3-202ENST00000585466 NUP210Q8TEM1 1887 aaPredicted RBP16.31■□□□□ 0.2
CLIP3-202ENST00000585466 GREB1Q4ZG55 1949 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 ECI2O75521 394 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 CST3P01034 146 aaPredicted RBP16.3■□□□□ 0.2
CLIP3-202ENST00000585466 KRT19P08727 400 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 DLATP10515 647 aaKnown RBP16.3■□□□□ 0.2
CLIP3-202ENST00000585466 GJA1P17302 382 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 CASP4P49662 377 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 GPC5P78333 572 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms