RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	CHRM2	P08172	466 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	PPP3CB	P16298	524 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	POU3F3	P20264	500 aa	Predicted RBP	3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	NXPH1	P58417	271 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	KRTAP10-9	P60411	292 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	TAP2	Q03519	686 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	ZNF425	Q6IV72	752 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	MIGA2	Q7L4E1	593 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	BHLHA9	Q7RTU4	235 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	AMIGO2	Q86SJ2	522 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	RSPH3	Q86UC2	560 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	PPM1N	Q8N819	430 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	C9orf106	Q8NAJ2	232 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	TMIE	Q8NEW7	156 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	SNX19	Q92543	992 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	RAB24	Q969Q5	203 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	PACSIN1	Q9BY11	444 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	FLRT1	Q9NZU1	646 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	SAP30BP	Q9UHR5	308 aa	Known RBP	3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	TUBD1	Q9UJT1	453 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	MED1	Q15648	1581 aa	Predicted RBP	3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	TTC37	Q6PGP7	1564 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	ABCA9	Q8IUA7	1624 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	CD109	Q6YHK3	1445 aa		3.87	□□□□□ -1.79
VAPA-208	ENST00000584796	ARAP3	Q8WWN8	1544 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	WDR91	A4D1P6	747 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	GCOM1	H8Y6P7	765 aa	Predicted RBP	3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	CD1A	P06126	327 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.86	□□□□□ -1.79	2e-6	■■■■□ 20.5
VAPA-208	ENST00000584796	ZNF280A	P59817	542 aa	Predicted RBP	3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	SSBP2	P81877	361 aa	Predicted RBP	3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	ITIH3	Q06033	890 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	PIGF	Q07326	219 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	INAVA	Q3KP66	663 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	PREPL	Q4J6C6	727 aa	Predicted RBP	3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	AMOTL1	Q8IY63	956 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	PDPR	Q8NCN5	879 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	DDB2	Q92466	427 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	HDAC10	Q969S8	669 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	MRGPRX4	Q96LA9	322 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	KLC4	Q9NSK0	619 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	SLC45A2	Q9UMX9	530 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	IPP	Q9Y573	584 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	PCDHA13	Q9Y5I0	950 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	C3	P01024	1663 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	PHLDB1	Q86UU1	1377 aa		3.86	□□□□□ -1.79
VAPA-208	ENST00000584796	UGGT2	Q9NYU1	1516 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	LINC01548	A6NM66	108 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796		E9PLN8	166 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	TOR1B	O14657	336 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	NDUFS2	O75306	463 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	URI1	O94763	535 aa	Predicted RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	ANXA1	P04083	346 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	EXOSC10	Q01780	885 aa	Known RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	TFF2	Q03403	129 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	TLE1	Q04724	770 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	RAB39A	Q14964	217 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	LLGL1	Q15334	1064 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	EZH2	Q15910	746 aa	Known RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	SDE2	Q6IQ49	451 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	TAPT1	Q6NXT6	567 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	CBARP	Q8N350	705 aa	Predicted RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	B3GALNT2	Q8NCR0	500 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	NSUN7	Q8NE18	718 aa	Known RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	SEMA6D	Q8NFY4	1073 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	JADE3	Q92613	823 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	PBK	Q96KB5	322 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	HAPLN3	Q96S86	360 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	VKORC1	Q9BQB6	163 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	FAM126A	Q9BYI3	521 aa	Predicted RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	IMPG2	Q9BZV3	1241 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	CALCOCO1	Q9P1Z2	691 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	ADGRA2	Q96PE1	1338 aa		3.85	□□□□□ -1.79
VAPA-208	ENST00000584796	ALK	Q9UM73	1620 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	HTRA2	O43464	458 aa	Predicted RBP	3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	C5AR1	P21730	350 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	EDNRB	P24530	442 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	CNGA1	P29973	690 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	NPTX2	P47972	431 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	SLC10A2	Q12908	348 aa	Predicted RBP	3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	MAPK7	Q13164	816 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	RASAL3	Q86YV0	1011 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	POC1B	Q8TC44	478 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	RFK	Q969G6	155 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	DMRTA2	Q96SC8	542 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	ALG8	Q9BVK2	526 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	ST3GAL5	Q9UNP4	418 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	LIMCH1	Q9UPQ0	1083 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	TMA7	Q9Y2S6	64 aa	Known RBP	3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	SPATA31A3	Q5VYP0	1347 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	YEATS2	Q9ULM3	1422 aa		3.84	□□□□□ -1.79
VAPA-208	ENST00000584796	LATS1	O95835	1130 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	DRD4	P21917	467 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	SLC16A1	P53985	500 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	CLUL1	Q15846	466 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	SRSF7	Q16629	238 aa	Known RBP eCLIP	3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	C3orf36	Q3SXR2	165 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	FAM153C	Q494X1	144 aa		3.83	□□□□□ -1.8
VAPA-208	ENST00000584796	GIMAP6	Q6P9H5	292 aa		3.83	□□□□□ -1.8

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