RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PAEPP09466 180 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 ATF7P17544 494 aaPredicted RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 CYP3A5P20815 502 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CDK7P50613 346 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 RAB27AP51159 221 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CENPCQ03188 943 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MMRN1Q13201 1228 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MBTPS1Q14703 1052 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 NAA30Q147X3 362 aaPredicted RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 TCEAL1Q15170 157 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 PTPROQ16827 1216 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MEI1Q5TIA1 1274 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 RHOT2Q8IXI1 618 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MCOLN2Q8IZK6 566 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 SLC4A11Q8NBS3 891 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 TFAP2BQ92481 460 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CAPZA3Q96KX2 299 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 ZFP42Q96MM3 310 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 ZNF560Q96MR9 790 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 PPP1R10Q96QC0 940 aaKnown RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 RPS6KC1Q96S38 1066 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MMS19Q96T76 1030 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 GAD1Q99259 594 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 ADAM2Q99965 735 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MRPL45Q9BRJ2 306 aaKnown RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 RNF208Q9H0X6 261 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 GOLGA2P5Q9HBQ8 144 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CNOT8Q9UFF9 292 aaKnown RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 CHORDC1Q9UHD1 332 aaPredicted RBP11.2□□□□□ -0.62
SS18-217ENST00000580958 GTF3C4Q9UKN8 822 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 SNX12Q9UMY4 172 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 SNX9Q9Y5X1 595 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 SQORQ9Y6N5 450 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 MICAL3Q7RTP6 2002 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 TMEM110-MUSTN1A8MSY1 372 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 ZNF185O15231 689 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 BUB1BO60566 1050 aaPredicted RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 ZNF623O75123 536 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 TADA3O75528 432 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 MTA2O94776 668 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 KIF4AO95239 1232 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 MLH1P40692 756 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 NSFP46459 744 aaKnown RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 TAF6P49848 677 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 DNA2P51530 1060 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 HADHBP55084 474 aaKnown RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 INCA1Q0VD86 236 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 DENND1BQ6P3S1 775 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 AGMOQ6ZNB7 445 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 MON1BQ7L1V2 547 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 SLFN11Q7Z7L1 901 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 PHLDB2Q86SQ0 1253 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 DAAM2Q86T65 1068 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 SYCE1Q8N0S2 351 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 TTC39CQ8N584 583 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 CEP112Q8N8E3 955 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 USP38Q8NB14 1042 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 RNF169Q8NCN4 708 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 C1orf131Q8NDD1 294 aaKnown RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 ZNF564Q8TBZ8 553 aaPredicted RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 OSBPL9Q96SU4 736 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 PSMB7Q99436 277 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 C11orf70Q9BRQ4 267 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 NUP85Q9BW27 656 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 SEZ6LQ9BYH1 1024 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 MIOSQ9NXC5 875 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 OGDHLQ9ULD0 1010 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 BARX2Q9UMQ3 279 aaPredicted RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 PCDHGC3Q9UN70 934 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 PACSIN2Q9UNF0 486 aaPredicted RBP11.19□□□□□ -0.62
SS18-217ENST00000580958 STXBP5LQ9Y2K9 1186 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 GIT1Q9Y2X7 761 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 DNAH12Q6ZR08 3092 aa11.19□□□□□ -0.62
SS18-217ENST00000580958 ARL5CA6NH57 179 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 DYNC1I1O14576 645 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 SPTLC1O15269 473 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 MED7O43513 233 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 LSM8O95777 96 aaKnown RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 MYBL1P10243 752 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 PRLRP16471 622 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 TCP1P17987 556 aaKnown RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 LRPAP1P30533 357 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 PNPLA4P41247 253 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 SCNN1GP51170 649 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 NDST1P52848 882 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 RPS6KA1Q15418 735 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 SV2CQ496J9 727 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 C2CD6Q53TS8 623 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 LIN9Q5TKA1 542 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 PPP1R2P3Q6NXS1 205 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 LLGL2Q6P1M3 1020 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 TMEM92Q6UXU6 159 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 MMS22LQ6ZRQ5 1243 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 LRRC8DQ7L1W4 858 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 PEX26Q7Z412 305 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 NT5DC3Q86UY8 548 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 PHF13Q86YI8 300 aaPredicted RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 FAM126BQ8IXS8 530 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 TMEM35BQ8NCS4 154 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 GSTCDQ8NEC7 633 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms