RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMEM35BQ8NCS4 154 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ATXN2LQ8WWM7 1075 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 RBM41Q96IZ5 413 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 XYLT2Q9H1B5 865 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 FZD8Q9H461 694 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 TXNRD2Q9NNW7 524 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ANAPC5Q9UJX4 755 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 PCDHGC3Q9UN70 934 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 OTOFQ9HC10 1997 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 B4GALT4O60513 344 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ACSL3O95573 720 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TTC4O95801 387 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 WEE2P0C1S8 567 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TCF4P15884 667 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 EIF4BP23588 611 aaKnown RBP10.67□□□□□ -0.7
VPS53-220ENST00000576149 GJC1P36383 396 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 SLC26A2P50443 739 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TFAMQ00059 246 aaKnown RBP10.67□□□□□ -0.7
VPS53-220ENST00000576149 Q3C1V9 767 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ATP13A4Q4VNC1 1196 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ZNF394Q53GI3 561 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 PPP1R15BQ5SWA1 713 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 GPAT2Q6NUI2 795 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 DNAJC24Q6P3W2 148 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 CCDC62Q6P9F0 684 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ZNF365Q70YC5 407 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 MICALL1Q8N3F8 863 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 WDTC1Q8N5D0 677 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 BBOF1Q8ND07 529 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 CHMP6Q96FZ7 201 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 CLMNQ96JQ2 1002 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 SPATA33Q96N06 139 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 MCEEQ96PE7 176 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 SLITRK1Q96PX8 696 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 FAM118BQ9BPY3 351 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 SELENOSQ9BQE4 189 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 JPH2Q9BR39 696 aaPredicted RBP10.67□□□□□ -0.7
VPS53-220ENST00000576149 RBPJLQ9UBG7 517 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 AGTPBP1Q9UPW5 1226 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 DRD4P21917 467 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 KLRC2P26717 231 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ASPAP45381 313 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 IFT88Q13099 833 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TFDP1Q14186 410 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 LONRF1Q17RB8 773 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ZNF699Q32M78 642 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 NBPF20Q3BBV1 942 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ATF7IP2Q5U623 682 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TAOK1Q7L7X3 1001 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 THNSL1Q8IYQ7 743 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TRAPPC12Q8WVT3 735 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 TFAP2BQ92481 460 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 SERPINB12Q96P63 405 aa10.67□□□□□ -0.7
VPS53-220ENST00000576149 ZNF317Q96PQ6 595 aaPredicted RBP10.67□□□□□ -0.7
VPS53-220ENST00000576149 SPDYE5A6NIY4 337 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 F8VP50 259 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 TNNC2P02585 160 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 GJB1P08034 283 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 VPS41P49754 854 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 OGDHQ02218 1023 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 LMNB2Q03252 620 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 TAP1Q03518 808 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 KYNUQ16719 465 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 DRICH1Q6PGQ1 229 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 DCUN1D2Q6PH85 259 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 MFSD7Q6UXD7 560 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 PACS2Q86VP3 889 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 RELL1Q8IUW5 271 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 FBXO16Q8IX29 292 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 ANKRD13AQ8IZ07 590 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 ANKRD36BP1Q96IX9 119 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 SEC16BQ96JE7 1060 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 NLRP4Q96MN2 994 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 MMP19Q99542 508 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 SMARCAD1Q9H4L7 1026 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 CCDC134Q9H6E4 229 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 KLHL11Q9NVR0 708 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 KCNH4Q9UQ05 1017 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 IVNS1ABPQ9Y6Y0 642 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 DICER1Q9UPY3 1922 aaKnown RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 PI4K2BG5E9Z4 385 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 INO80B-WBP1J3KQ70 363 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 B4GALT5O43286 388 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 LIASO43766 372 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 HBP1O60381 514 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 TCEA3O75764 348 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 TJP3O95049 919 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 KRT1P04264 644 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 KRT10P13645 584 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 COPS2P61201 443 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 PIGHQ14442 188 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 KCTD2Q14681 263 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 TTC31Q49AM3 519 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 GKAP1Q5VSY0 366 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 IZUMO3Q5VZ72 239 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 EEF1DP3Q658K8 133 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 EFCAB12Q6NXP0 572 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 CPLX4Q7Z7G2 160 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 EXOC3L1Q86VI1 746 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 ERICH1Q86X53 443 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms