RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 PDCL2Q8N4E4 241 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 ATAD1Q8NBU5 361 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 TMEM174Q8WUU8 243 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 RSAD2Q8WXG1 361 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 PBXIP1Q96AQ6 731 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 CRISPLD1Q9H336 500 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 DMAC2Q9NW81 257 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 L1RE1Q9UN81 338 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 SNX9Q9Y5X1 595 aa21.67■■□□□ 1.06
NUP88-204ENST00000572290 DENND4AQ7Z401 1863 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 TMEM86AQ8N2M4 240 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 HPDLQ96IR7 371 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 CEP72Q9P209 647 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 RAPGEFL1Q9UHV5 662 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 DUSP12Q9UNI6 340 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 SLC27A5Q9Y2P5 690 aa21.66■■□□□ 1.06
NUP88-204ENST00000572290 ANHXE9PGG2 379 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 ZNF197O14709 1029 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 CALUO43852 315 aaPredicted RBP21.65■■□□□ 1.06
NUP88-204ENST00000572290 NR3C1P04150 777 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 ALDH1A3P47895 512 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 FAM160A1Q05DH4 1040 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 SMARCB1Q12824 385 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 SNW1Q13573 536 aaKnown RBP21.65■■□□□ 1.06
NUP88-204ENST00000572290 HTR4Q13639 388 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 SLC5A9Q2M3M2 681 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 CYP4A22Q5TCH4 519 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 PDZD4Q76G19 769 aaPredicted RBP21.65■■□□□ 1.06
NUP88-204ENST00000572290 NPAS3Q8IXF0 933 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 DCP1BQ8IZD4 617 aaKnown RBP21.65■■□□□ 1.06
NUP88-204ENST00000572290 TOP6BLQ8N6T0 577 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 ENGASEQ8NFI3 743 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 ING5Q8WYH8 240 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 GZF1Q9H116 711 aaPredicted RBP21.65■■□□□ 1.06
NUP88-204ENST00000572290 HSFX1Q9UBD0 423 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 TRAF3IP3Q9Y228 551 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 HCN4Q9Y3Q4 1203 aa21.65■■□□□ 1.06
NUP88-204ENST00000572290 EPHB3P54753 998 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 MYL7Q01449 175 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 TSPY1Q01534 308 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 PNOCQ13519 176 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 PRSS36Q5K4E3 855 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 LRRTM3Q86VH5 581 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 GUF1Q8N442 669 aaKnown RBP21.64■■□□□ 1.05
NUP88-204ENST00000572290 SLC44A3Q8N4M1 653 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 LEMD2Q8NC56 503 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 SPATA18Q8TC71 538 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 C2orf15Q8WU43 125 aaKnown RBP21.64■■□□□ 1.05
NUP88-204ENST00000572290 DDX43Q9NXZ2 648 aaKnown RBP21.64■■□□□ 1.05
NUP88-204ENST00000572290 MAPK8IP1Q9UQF2 711 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 NUMBLQ9Y6R0 609 aa21.64■■□□□ 1.05
NUP88-204ENST00000572290 C2orf16Q68DN1 1984 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 MICAL2O94851 1124 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 CST3P01034 146 aaPredicted RBP21.63■■□□□ 1.05
NUP88-204ENST00000572290 CEBPBP17676 345 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 TUFMP49411 452 aaKnown RBP21.63■■□□□ 1.05
NUP88-204ENST00000572290 CASP4P49662 377 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 PARM1Q6UWI2 310 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 MTSS1LQ765P7 747 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 DPH6Q7L8W6 267 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 SUGP1Q8IWZ8 645 aaKnown RBP21.63■■□□□ 1.05
NUP88-204ENST00000572290 ADGRF2Q8IZF7 708 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 HS6ST3Q8IZP7 471 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 FBXL6Q8N531 539 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 TTC9BQ8N6N2 239 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 ST13P5Q8NFI4 369 aaPredicted RBP21.63■■□□□ 1.05
NUP88-204ENST00000572290 SPPL2BQ8TCT7 592 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 PLEKHO2Q8TD55 490 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 PARD3BQ8TEW8 1205 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 ZNF516Q92618 1163 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 MCRS1Q96EZ8 462 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 ACBD6Q9BR61 282 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 DNAJC25Q9H1X3 360 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 ASAH2Q9NR71 780 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 RMND1Q9NWS8 449 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 GDE1Q9NZC3 331 aa21.63■■□□□ 1.05
NUP88-204ENST00000572290 MTCL1Q9Y4B5 1905 aaKnown RBP21.63■■□□□ 1.05
NUP88-204ENST00000572290 NARSO43776 548 aaKnown RBP21.62■■□□□ 1.05
NUP88-204ENST00000572290 MYL4P12829 197 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 LHX1P48742 406 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 AP3M2P53677 418 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 EPHA5P54756 1037 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 TRPC3Q13507 836 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 SOWAHAQ2M3V2 549 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 MGAT5BQ3V5L5 792 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 CEP135Q66GS9 1140 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 OSTM1Q86WC4 334 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 FGF14Q92915 247 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 TCEAL4Q96EI5 215 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 TIGD1Q96MW7 591 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 SEPT5Q99719 369 aaPredicted RBP21.62■■□□□ 1.05
NUP88-204ENST00000572290 FRMD4BQ9Y2L6 1034 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 ASB3Q9Y575 518 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 ANK1P16157 1881 aa21.62■■□□□ 1.05
NUP88-204ENST00000572290 LRRIQ3A6PVS8 624 aaPredicted RBP21.61■■□□□ 1.05
NUP88-204ENST00000572290 GABRDO14764 452 aa21.61■■□□□ 1.05
NUP88-204ENST00000572290 PHACTR2O75167 634 aa21.61■■□□□ 1.05
NUP88-204ENST00000572290 SOAT2O75908 522 aa21.61■■□□□ 1.05
NUP88-204ENST00000572290 ACAT1P24752 427 aaKnown RBP21.61■■□□□ 1.05
NUP88-204ENST00000572290 CCR2P41597 374 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms