RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZACNQ401N2 412 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 DNAJC24Q6P3W2 148 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 NLRP9Q7RTR0 991 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ATP11CQ8NB49 1132 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 PYROXD1Q8WU10 500 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 FAXDC2Q96IV6 333 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 TBC1D10AQ9BXI6 508 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 RAVER2Q9HCJ3 691 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SAR1AQ9NR31 198 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 DDX56Q9NY93 547 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ANKFY1Q9P2R3 1169 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 LRRD1A4D1F6 860 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 CLGNO14967 610 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ARL4CP56559 192 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 GEMIN4P57678 1058 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 PGM5Q15124 567 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 KLHL38Q2WGJ6 581 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 LRRC38Q5VT99 294 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SPOCD1Q6ZMY3 1216 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 BSNDQ8WZ55 320 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SPOCK2Q92563 424 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SLITRK1Q96PX8 696 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 FAM167BQ9BTA0 163 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 PCDH9Q9HC56 1237 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SLC24A3Q9HC58 644 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 GABBR1Q9UBS5 961 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 PTPN4P29074 926 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 DSG3P32926 999 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ZBTB16Q05516 673 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ANO5Q75V66 913 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 FAM13CQ8NE31 585 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ARMC2Q8NEN0 867 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 C10orf82Q8WW14 230 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ZNF75CPQ92670 426 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ALKBH8Q96BT7 664 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 ZNF341Q9BYN7 854 aa11.35□□□□□ -0.59
CCDC40-207ENST00000572253 SSU72Q9NP77 194 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 AGO2Q9UKV8 859 aaKnown RBP11.35□□□□□ -0.59
CCDC40-207ENST00000572253 WDR46O15213 610 aaKnown RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 CCNE2O96020 404 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 ZSCAN5DPP0CG00 497 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 MARK3P27448 753 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 RTP1P59025 263 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 RPS6P62753 249 aaKnown RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 STYK1Q6J9G0 422 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 MFSD7Q6UXD7 560 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 ANKLE1Q8NAG6 615 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 OSBPL1AQ9BXW6 950 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 KIF9Q9HAQ2 790 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 NRXN2Q9P2S2 1712 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SEPT9Q9UHD8 586 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 AGTPBP1Q9UPW5 1226 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 IKBKGQ9Y6K9 419 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SLX4Q8IY92 1834 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 C2CD2LO14523 706 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 KRT4P19013 534 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 TAP1Q03518 808 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SLFN12LQ6IEE8 588 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SPOPLQ6IQ16 392 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 C15orf39Q6ZRI6 1047 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SH3TC2Q8TF17 1288 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 UTP4Q969X6 686 aaKnown RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 TRIM55Q9BYV6 548 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 POLR3FQ9H1D9 316 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 NPHS2Q9NP85 383 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 ATP9AO75110 1047 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 PEX11AO75192 247 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SMNDC1O75940 238 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 PSAPP07602 524 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SOX10P56693 466 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 SLC1A5Q15758 541 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 TAF1BQ53T94 588 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-207ENST00000572253 XRRA1Q6P2D8 792 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 PALM2Q8IXS6 379 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 HAUS1Q96CS2 278 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 PDCD2LQ9BRP1 358 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 ZFATQ9P243 1243 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 STOML1Q9UBI4 398 aa11.34□□□□□ -0.59
CCDC40-207ENST00000572253 TBC1D12O60347 775 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 SKAP2O75563 359 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 HAUS5O94927 633 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 CBX6O95503 412 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 LDHAP00338 332 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 EPHB2P29323 1055 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 CCND2P30279 289 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 SSTR3P32745 418 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 FASTKD3Q14CZ7 662 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 MUM1Q2TAK8 710 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 TDRD10Q5VZ19 366 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 OTOAQ7RTW8 1153 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ANKMY2Q8IV38 441 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ZNF516Q92618 1163 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 DCLRE1BQ9H816 532 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 RBAKQ9NYW8 714 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 NFASCO94856 1347 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 CCDC22O60826 627 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 C4BPAP04003 597 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ITGAVP06756 1048 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 GCAP28676 217 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms