RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RALGAPA1Q6GYQ0 2036 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 SOAT2O75908 522 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 CCNE1P24864 410 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 ADALQ6DHV7 355 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 GAREM2Q75VX8 874 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 DGLUCYQ7Z3D6 616 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 DNAJB7Q7Z6W7 309 aaPredicted RBP16.16■□□□□ 0.18
CLN3-236ENST00000568558 ARID3BQ8IVW6 561 aaPredicted RBP16.16■□□□□ 0.18
CLN3-236ENST00000568558 YAF2Q8IY57 180 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 CSGALNACT1Q8TDX6 532 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 MSANTD3Q96H12 275 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 CCSER1Q9C0I3 900 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 DLL3Q9NYJ7 618 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 C2CD2Q9Y426 696 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 STYXL1Q9Y6J8 313 aa16.16■□□□□ 0.18
CLN3-236ENST00000568558 FGF19O95750 216 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 CHRNB1P11230 501 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 GABRR2P28476 465 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 DDIT3P35638 169 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 CCR3P51677 355 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 SLC39A12Q504Y0 691 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 SLFN12LQ6IEE8 588 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 ITIH5Q86UX2 942 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 ZCWPW1Q9H0M4 648 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 ATXN3LQ9H3M9 355 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 UPF2Q9HAU5 1272 aaKnown RBP16.15■□□□□ 0.18
CLN3-236ENST00000568558 AGO2Q9UKV8 859 aaKnown RBP16.15■□□□□ 0.18
CLN3-236ENST00000568558 DSEQ9UL01 958 aa16.15■□□□□ 0.18
CLN3-236ENST00000568558 SLC38A8A6NNN8 435 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 ATF6P18850 670 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 SOX9P48436 509 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 TUFMP49411 452 aaKnown RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 TAF6P49848 677 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 NRLP54845 237 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 POU5F1Q01860 360 aaKnown RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 GAS6Q14393 721 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 PPP2R5DQ14738 602 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 GPR158Q5T848 1215 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 C1orf228Q6PIY5 440 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 CRELD2Q6UXH1 353 aaPredicted RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 USP49Q70CQ1 688 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 SFR1Q86XK3 245 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 GPIHBP1Q8IV16 184 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 EFCAB13Q8IY85 973 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 GPR161Q8N6U8 529 aaKnown RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 KRI1Q8N9T8 703 aaKnown RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 SECISBP2LQ93073 1101 aaKnown RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 HVCN1Q96D96 273 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 EPSTI1Q96J88 318 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 LRRC3BQ96PB8 259 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 SEPT5Q99719 369 aaPredicted RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 LPIN3Q9BQK8 851 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 BACH2Q9BYV9 841 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 IKZF4Q9H2S9 585 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 C8orf33Q9H7E9 229 aaPredicted RBP16.14■□□□□ 0.17
CLN3-236ENST00000568558 DPP3Q9NY33 737 aa16.14■□□□□ 0.17
CLN3-236ENST00000568558 MED19A0JLT2 244 aaPredicted RBP16.13■□□□□ 0.17
CLN3-236ENST00000568558 CYB561D2O14569 222 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 PPP1R37O75864 691 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 KPNA1P52294 538 aaPredicted RBP16.13■□□□□ 0.17
CLN3-236ENST00000568558 SATB1Q01826 763 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 VEPH1Q14D04 833 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 PTPAQ15257 358 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 RSPO4Q2I0M5 234 aaPredicted RBP16.13■□□□□ 0.17
CLN3-236ENST00000568558 MGAT5BQ3V5L5 792 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 ARHGAP29Q52LW3 1261 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 ARHGAP15Q53QZ3 475 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 WDR44Q5JSH3 913 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 DYMQ7RTS9 669 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 ZNF720Q7Z2F6 126 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 METTL23Q86XA0 190 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 FAM200AQ8TCP9 573 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 C2orf15Q8WU43 125 aaKnown RBP16.13■□□□□ 0.17
CLN3-236ENST00000568558 PYM1Q9BRP8 204 aaKnown RBP16.13■□□□□ 0.17
CLN3-236ENST00000568558 IL21Q9HBE4 155 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 OBP2AQ9NY56 170 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 STK17AQ9UEE5 414 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 GREB1Q4ZG55 1949 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 ANAPC1Q9H1A4 1944 aa16.13■□□□□ 0.17
CLN3-236ENST00000568558 MYBPHLA2RUH7 354 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 VPS37CA5D8V6 355 aaPredicted RBP16.12■□□□□ 0.17
CLN3-236ENST00000568558 SPECC1L-ADORA2AF8WAN1 911 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 DPYSL4O14531 572 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 PRAMEF12O95522 483 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 WEE1P30291 646 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CDC25CP30307 473 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 ADSSP30520 456 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CTHP32929 405 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CXCL12P48061 93 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CDR1P51861 262 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CYP4F8P98187 520 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 LRRC32Q14392 662 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 SV2CQ496J9 727 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 TXNDC11Q6PKC3 985 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 RALGPS2Q86X27 583 aaPredicted RBP16.12■□□□□ 0.17
CLN3-236ENST00000568558 NT5DC4Q86YG4 428 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 THEM5Q8N1Q8 247 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 SPEM1Q8N4L4 309 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 SPPL2BQ8TCT7 592 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 POMGNT1Q8WZA1 660 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms