RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 FAM105AQ9NUU6 356 aa7.51□□□□□ -1.21
SMG1-215ENST00000568239 CNTN3Q9P232 1028 aa7.51□□□□□ -1.21
SMG1-215ENST00000568239 USTQ9Y2C2 406 aa7.51□□□□□ -1.21
SMG1-215ENST00000568239 STXBP5LQ9Y2K9 1186 aa7.51□□□□□ -1.21
SMG1-215ENST00000568239 PGRMC1O00264 195 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 FGGP02679 453 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ATF7P17544 494 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 CD52P31358 61 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CDR1P51861 262 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PTPN11Q06124 597 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 KCTD19Q17RG1 926 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 CYP4A22Q5TCH4 519 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 C11orf63Q6NUN7 778 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 C8orf74Q6P047 294 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 AADACL2Q6P093 401 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 DENND1BQ6P3S1 775 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 DCUN1D2Q6PH85 259 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MTERF4Q7Z6M4 381 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 C12orf29Q8N999 325 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SLC4A11Q8NBS3 891 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ARRDC4Q8NCT1 418 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SMG8Q8ND04 991 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 OR6B3Q8NGW1 331 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 UBA3Q8TBC4 463 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SH3TC2Q8TF17 1288 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 KRT12Q99456 494 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 OSBPL7Q9BZF2 842 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SENP6Q9GZR1 1112 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 AGO3Q9H9G7 860 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 CYP3A43Q9HB55 503 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MRPL47Q9HD33 250 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 ARFGAP3Q9NP61 516 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 BARX2Q9UMQ3 279 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 GOLGA8SH3BPF8 625 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 M0QYV0 167 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 KRIT1O00522 736 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 GPR182O15218 404 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 XPOTO43592 962 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 GRK4P32298 578 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 GJC1P36383 396 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MLH1P40692 756 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 HADHBP55084 474 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 PAK2Q13177 524 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ARHGEF6Q15052 776 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 LONRF2Q1L5Z9 754 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 FBXO47Q5MNV8 452 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MAP3K21Q5TCX8 1036 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 C9orf57Q5W0N0 161 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CCSAPQ6IQ19 270 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 USP38Q8NB14 1042 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PXYLP1Q8TE99 480 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 WHAMMQ8TF30 809 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 HDAC7Q8WUI4 952 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ALG3Q92685 438 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 RNPC3Q96LT9 517 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 RPS6KC1Q96S38 1066 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 GAD1Q99259 594 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.5□□□□□ -1.21
SMG1-215ENST00000568239 MRPL45Q9BRJ2 306 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 NT5C1AQ9BXI3 368 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 VRTNQ9H8Y1 702 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 FAM49BQ9NUQ9 324 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CACNG4Q9UBN1 327 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PADI3Q9ULW8 664 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 DERAQ9Y315 318 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 A8MXQ7 604 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PIK3R2O00459 728 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 DDX3YO15523 660 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 ERLIN1O75477 346 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CD4P01730 458 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CALB1P05937 261 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PAEPP09466 180 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PDGFRBP09619 1106 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ITGA4P13612 1032 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MMP8P22894 467 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CST5P28325 142 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 RPL7AP62424 266 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 SOX4Q06945 474 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 MAMLD1Q13495 774 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ZBTB6Q15916 424 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SGO2Q562F6 1265 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 DNAJC24Q6P3W2 148 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ALKAL1Q6UXT8 129 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 ACOT1Q86TX2 421 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PHF13Q86YI8 300 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 HACE1Q8IYU2 909 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MSANTD4Q8NCY6 345 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 CALR3Q96L12 384 aaKnown RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 MCEEQ96PE7 176 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 TRPV6Q9H1D0 765 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 AVENQ9NQS1 362 aaPredicted RBP7.5□□□□□ -1.21
SMG1-215ENST00000568239 STARD7Q9NQZ5 370 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PARVAQ9NVD7 372 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 PTCH2Q9Y6C5 1203 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 SCINQ9Y6U3 715 aa7.5□□□□□ -1.21
SMG1-215ENST00000568239 MKI67P46013 3256 aaKnown RBP7.49□□□□□ -1.21
SMG1-215ENST00000568239 CCDC151A5D8V7 595 aa7.49□□□□□ -1.21
SMG1-215ENST00000568239 KPNA7A9QM74 516 aa7.49□□□□□ -1.21
SMG1-215ENST00000568239 MIF4GDA9UHW6 222 aaKnown RBP7.49□□□□□ -1.21
SMG1-215ENST00000568239 MTA2O94776 668 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms