RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CDR1P51861 262 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 PTPAQ15257 358 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 TRIM61Q5EBN2 209 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 XKR4Q5GH76 650 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 ATF7IP2Q5U623 682 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 GALNT17Q6IS24 598 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 SYT13Q7L8C5 426 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 PIP4P1Q86T03 277 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 SLFN12Q8IYM2 578 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 TTC9BQ8N6N2 239 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 ADAM32Q8TC27 787 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 THG1LQ9NWX6 298 aaKnown RBP12.87□□□□□ -0.35
CLK3-222ENST00000568232 ANKFY1Q9P2R3 1169 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 TPCN1Q9ULQ1 816 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 CYSRT1A8MQ03 144 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 DTNBO60941 627 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 DEXIO95424 95 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 ARSAP15289 507 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 YARSP54577 528 aaKnown RBP12.86□□□□□ -0.35
CLK3-222ENST00000568232 PSMD2Q13200 908 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 PLD1Q13393 1074 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 USP39Q53GS9 565 aaKnown RBP12.86□□□□□ -0.35
CLK3-222ENST00000568232 ARHGAP15Q53QZ3 475 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 ATAD1Q8NBU5 361 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 MCPH1Q8NEM0 835 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 APPL2Q8NEU8 664 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 DEPTORQ8TB45 409 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 LRIG1Q96JA1 1093 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 SLC46A2Q9BY10 475 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 AGXT2Q9BYV1 514 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 TASP1Q9H6P5 420 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 FSCN3Q9NQT6 498 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 GJB4Q9NTQ9 266 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 TMEM74BQ9NUR3 256 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 SLC38A7Q9NVC3 462 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 CCL26Q9Y258 94 aa12.86□□□□□ -0.35
CLK3-222ENST00000568232 ATG2BQ96BY7 2078 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 ANTXRLA6NF34 631 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 EIF4E1BA6NMX2 242 aaKnown RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 ENGP17813 658 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 DRD1P21728 446 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 MARCKSP29966 332 aaPredicted RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 RPL9P32969 192 aaKnown RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 GRM5P41594 1212 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 LMAN2Q12907 356 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 SEMA3BQ13214 749 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 CENPPQ6IPU0 288 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 BLOC1S2Q6QNY1 142 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 ARMCX6Q7L4S7 300 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 RIN3Q8TB24 985 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 PSMG2Q969U7 264 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 P2RY13Q9BPV8 354 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 LPIN3Q9BQK8 851 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 LARP6Q9BRS8 491 aaKnown RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 CCDC94Q9BW85 323 aaPredicted RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 CDT1Q9H211 546 aa12.85□□□□□ -0.35
CLK3-222ENST00000568232 TOPORSQ9NS56 1045 aaPredicted RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 MBD1Q9UIS9 605 aaPredicted RBP12.85□□□□□ -0.35
CLK3-222ENST00000568232 H0Y626 953 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 KALRNO60229 2985 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 OAZ2O95190 189 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 TRIM16O95361 564 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 SPATA31C1P0DKV0 1188 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK3-222ENST00000568232 KCNE1P15382 129 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 RPS6KB1P23443 525 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 WEE1P30291 646 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 TXKP42681 527 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 NAMPTP43490 491 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 YWHAHQ04917 246 aaPredicted RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 RAB44Q7Z6P3 723 aaPredicted RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 FBXL16Q8N461 479 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 FRMD1Q8N878 549 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 TSTD1Q8NFU3 115 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 MDM1Q8TC05 714 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 NUSAP1Q9BXS6 441 aaKnown RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 TTC12Q9H892 705 aaPredicted RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 IL21Q9HBE4 155 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 EVLQ9UI08 416 aaPredicted RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 SNX14Q9Y5W7 946 aa12.84□□□□□ -0.35
CLK3-222ENST00000568232 ATXN2Q99700 1313 aaKnown RBP12.84□□□□□ -0.35
CLK3-222ENST00000568232 ABCA7Q8IZY2 2146 aa12.83□□□□□ -0.35
CLK3-222ENST00000568232 TENM4Q6N022 2769 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 MAST4O15021 2626 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 MTMR11A4FU01 709 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 PRB1P04280 392 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 GJA4P35212 333 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 RDXP35241 583 aaKnown RBP12.83□□□□□ -0.36
CLK3-222ENST00000568232 PTGER3P43115 390 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 EVCP57679 992 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 GPR17Q13304 367 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 FBXO43Q4G163 708 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 ANO7Q6IWH7 933 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 PADI6Q6TGC4 694 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 TMEFF1Q8IYR6 380 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 CMTM8Q8IZV2 173 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 RLN3Q8WXF3 142 aa12.83□□□□□ -0.36
CLK3-222ENST00000568232 USP13Q92995 863 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms