RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IL18RAPO95256 599 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 CSTF1Q05048 431 aaKnown RBP17.37■□□□□ 0.37
CLN3-229ENST00000567963 SLC39A12Q504Y0 691 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 L1TD1Q5T7N2 865 aaKnown RBP17.37■□□□□ 0.37
CLN3-229ENST00000567963 CCDC73Q6ZRK6 1079 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 GAREM2Q75VX8 874 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 METTL23Q86XA0 190 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 NT5DC4Q86YG4 428 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 ACCSQ96QU6 501 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 USP28Q96RU2 1077 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 PYM1Q9BRP8 204 aaKnown RBP17.37■□□□□ 0.37
CLN3-229ENST00000567963 PANK2Q9BZ23 570 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 OLFML3Q9NRN5 406 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 MTMR6Q9Y217 621 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 SPTBN4Q9H254 2564 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 COL4A2P08572 1712 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 TCHHQ07283 1943 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 TICRRQ7Z2Z1 1910 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 DMXL1Q9Y485 3027 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 KPNA7A9QM74 516 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 ARNTLO00327 626 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 GCNT3O95395 438 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 TUFMP49411 452 aaKnown RBP17.37■□□□□ 0.37
CLN3-229ENST00000567963 STXBP5Q5T5C0 1151 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 ITIH5Q86UX2 942 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 THEM5Q8N1Q8 247 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 FAM3CQ92520 227 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 FAM213AQ9BRX8 229 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 MKNK1Q9BUB5 465 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 ZSCAN16Q9H4T2 348 aaPredicted RBP17.37■□□□□ 0.37
CLN3-229ENST00000567963 PCDHB13Q9Y5F0 798 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 A0A087X0B3 334 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 FRMD3A2A2Y4 597 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 KINO60870 393 aaKnown RBP17.36■□□□□ 0.37
CLN3-229ENST00000567963 FGF19O95750 216 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 IDEP14735 1019 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 STAT6P42226 847 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 CDR1P51861 262 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 CASP5P51878 434 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 FCHO2Q0JRZ9 810 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 SMARCB1Q12824 385 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 WSCD1Q658N2 575 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 LRRTM3Q86VH5 581 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 ARID3BQ8IVW6 561 aaPredicted RBP17.36■□□□□ 0.37
CLN3-229ENST00000567963 SUMF1Q8NBK3 374 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 ZSWIM2Q8NEG5 633 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 RSPRY1Q96DX4 576 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 SEPT5Q99719 369 aaPredicted RBP17.36■□□□□ 0.37
CLN3-229ENST00000567963 ATXN3LQ9H3M9 355 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 NDRG2Q9UN36 371 aaKnown RBP17.36■□□□□ 0.37
CLN3-229ENST00000567963 PIAS3Q9Y6X2 628 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 GVINP1Q7Z2Y8 2422 aa17.36■□□□□ 0.37
CLN3-229ENST00000567963 F5P12259 2224 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 CHADO15335 359 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 STX6O43752 255 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 LDHAP00338 332 aaKnown RBP17.35■□□□□ 0.37
CLN3-229ENST00000567963 GABRR2P28476 465 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 MLLT6P55198 1093 aaPredicted RBP17.35■□□□□ 0.37
CLN3-229ENST00000567963 WNT7BP56706 349 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 MTAPQ13126 283 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 MGAT5BQ3V5L5 792 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 SV2CQ496J9 727 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 GPIHBP1Q8IV16 184 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 C2orf15Q8WU43 125 aaKnown RBP17.35■□□□□ 0.37
CLN3-229ENST00000567963 NELL1Q92832 810 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 SAAL1Q96ER3 474 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 LPIN3Q9BQK8 851 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 FOXD4L1Q9NU39 408 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 PANK4Q9NVE7 773 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 PCDHGA2Q9Y5H1 932 aa17.35■□□□□ 0.37
CLN3-229ENST00000567963 EP300Q09472 2414 aaPredicted RBP17.35■□□□□ 0.37
CLN3-229ENST00000567963 DNAH14Q0VDD8 3507 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 ATF6P18850 670 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 GARTP22102 1010 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 PNPLA4P41247 253 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 TFAMQ00059 246 aaKnown RBP17.34■□□□□ 0.37
CLN3-229ENST00000567963 ALCAMQ13740 583 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 MAMSTRQ6ZN01 415 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 BRSK2Q8IWQ3 736 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 YAF2Q8IY57 180 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 SYCP3Q8IZU3 236 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 ZBTB44Q8NCP5 570 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 FAM200AQ8TCP9 573 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 SPPL2BQ8TCT7 592 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 ATRIPQ8WXE1 791 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 RUBCNQ92622 972 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 ZNF560Q96MR9 790 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 FGFBP2Q9BYJ0 223 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 BACH2Q9BYV9 841 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 PRMT8Q9NR22 394 aaPredicted RBP17.34■□□□□ 0.37
CLN3-229ENST00000567963 ZSCAN32Q9NX65 697 aa17.34■□□□□ 0.37
CLN3-229ENST00000567963 K7ELQ4 463 aaPredicted RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 TULP1O00294 542 aaPredicted RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 CCNE1P24864 410 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 ID4P47928 161 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 NASPP49321 788 aaPredicted RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 VEPH1Q14D04 833 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 ARHGAP15Q53QZ3 475 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 GPR158Q5T848 1215 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 TSSK4Q6SA08 328 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms