RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ASS1P00966 412 aaKnown RBP20.98■□□□□ 0.95
CLN3-225ENST00000566824 PTMSP20962 102 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 ACAT1P24752 427 aaKnown RBP20.98■□□□□ 0.95
CLN3-225ENST00000566824 ATICP31939 592 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 RAP1GAPP47736 663 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 MXI1P50539 228 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 KCNQ1P51787 676 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 CDH8P55286 799 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 KRT39Q6A163 491 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 SCARA5Q6ZMJ2 495 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 RNF19BQ6ZMZ0 732 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 LRRTM3Q86VH5 581 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 ADGRF2Q8IZF7 708 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 TOP6BLQ8N6T0 577 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 CASP10Q92851 521 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 SYAP1Q96A49 352 aaPredicted RBP20.98■□□□□ 0.95
CLN3-225ENST00000566824 S1PR5Q9H228 398 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 THEGQ9P2T0 379 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 DSEQ9UL01 958 aa20.98■□□□□ 0.95
CLN3-225ENST00000566824 GRXCR2A6NFK2 248 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 RFPL2O75678 378 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 ABLIM3O94929 683 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 SEC24AO95486 1093 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 WEE2P0C1S8 567 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 LMO2P25791 158 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 FMO5P49326 533 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 METTL23Q86XA0 190 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 KREMEN2Q8NCW0 462 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 MMS19Q96T76 1030 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 CRISPLD1Q9H336 500 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 VRTNQ9H8Y1 702 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 TMLHEQ9NVH6 421 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 FBXW11Q9UKB1 542 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 UNC80Q8N2C7 3258 aa20.97■□□□□ 0.95
CLN3-225ENST00000566824 GABRDO14764 452 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 STX10O60499 249 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 GNA14O95837 355 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 TPD52L1Q16890 204 aaPredicted RBP20.96■□□□□ 0.95
CLN3-225ENST00000566824 SGSM1Q2NKQ1 1148 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 LEXMQ3ZCV2 418 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 ANO6Q4KMQ2 910 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 CT47A1Q5JQC4 288 aaPredicted RBP20.96■□□□□ 0.95
CLN3-225ENST00000566824 RARS2Q5T160 578 aaKnown RBP20.96■□□□□ 0.95
CLN3-225ENST00000566824 CREBRFQ8IUR6 639 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 ENOX1Q8TC92 643 aaKnown RBP20.96■□□□□ 0.95
CLN3-225ENST00000566824 PGLYRP2Q96PD5 576 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 LPIN3Q9BQK8 851 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 ZCWPW1Q9H0M4 648 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 THAP9Q9H5L6 903 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 DDX43Q9NXZ2 648 aaKnown RBP20.96■□□□□ 0.95
CLN3-225ENST00000566824 CD207Q9UJ71 328 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 NFE2L3Q9Y4A8 694 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 C5orf42Q9H799 3197 aa20.96■□□□□ 0.95
CLN3-225ENST00000566824 OR6C75A6NL08 312 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 ATP2C2O75185 946 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 FGFR1OPO95684 399 aaKnown RBP20.95■□□□□ 0.94
CLN3-225ENST00000566824 CPB1P15086 417 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 ASPAP45381 313 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 TNNC1P63316 161 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 KCNH2Q12809 1159 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 ZNF667Q5HYK9 610 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 TMC5Q6UXY8 1006 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 TMEM86AQ8N2M4 240 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 TTC9BQ8N6N2 239 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 FBXL13Q8NEE6 735 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 ZNF461Q8TAF7 563 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 TATDN2Q93075 761 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 RAB20Q9NX57 234 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 COQ4Q9Y3A0 265 aa20.95■□□□□ 0.94
CLN3-225ENST00000566824 ARHGEF37A1IGU5 675 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 FSD2A1L4K1 749 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 CLSTN1O94985 981 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 PDGFRBP09619 1106 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 CCDC192P0DO97 292 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 WARSP23381 471 aaKnown RBP20.94■□□□□ 0.94
CLN3-225ENST00000566824 NOP14P78316 857 aaKnown RBP20.94■□□□□ 0.94
CLN3-225ENST00000566824 NCAPHQ15003 741 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 SKOR2Q2VWA4 1001 aaPredicted RBP20.94■□□□□ 0.94
CLN3-225ENST00000566824 ZSCAN23Q3MJ62 389 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 SLC39A12Q504Y0 691 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 DPH6Q7L8W6 267 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 THEM5Q8N1Q8 247 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 SMRP1Q8NCR6 262 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 TAF4BQ92750 862 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 PKMYT1Q99640 499 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 DZANK1Q9NVP4 752 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 FANCLQ9NW38 375 aa20.94■□□□□ 0.94
CLN3-225ENST00000566824 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.94■□□□□ 0.94
CLN3-225ENST00000566824 TACC1O75410 805 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 MYL7Q01449 175 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 ADCY1Q08828 1119 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 GPR17Q13304 367 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 CDKAL1Q5VV42 579 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.93■□□□□ 0.94
CLN3-225ENST00000566824 ATAD1Q8NBU5 361 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 LMO3Q8TAP4 145 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 SLC7A14Q8TBB6 771 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 ZNF707Q96C28 371 aaPredicted RBP20.93■□□□□ 0.94
CLN3-225ENST00000566824 HSD3B7Q9H2F3 369 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 DPEP3Q9H4B8 488 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms