RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MRFAP1Q9Y605 127 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 EFCAB8A8MWE9 144 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 H3BNC9 293 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 DGKIO75912 1065 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 ASS1P00966 412 aaKnown RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 KRT19P08727 400 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 CXCL8P10145 99 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 ZSCAN20P17040 1043 aaPredicted RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 BMPR1AP36894 532 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 GALCP54803 685 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 WNT7BP56706 349 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 NOP14P78316 857 aaKnown RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 GPC5P78333 572 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 RBP5P82980 135 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 CDR2Q01850 454 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 CKAP4Q07065 602 aaKnown RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 ZNF699Q32M78 642 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 SLC24A5Q71RS6 500 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 RHOT2Q8IXI1 618 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 CMTR2Q8IYT2 770 aaKnown RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 LNX1Q8TBB1 728 aaPredicted RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 ADAMTS19Q8TE59 1207 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 UBXN4Q92575 508 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 KAT5Q92993 513 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 PPP2R3CQ969Q6 453 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 UHRF1Q96T88 793 aaPredicted RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 ADAM2Q99965 735 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 SYT11Q9BT88 431 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 PLVAPQ9BX97 442 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 MTMR12Q9C0I1 747 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 ERVK-5Q9HDB9 667 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 NOC2LQ9Y3T9 749 aaKnown RBP9.54□□□□□ -0.88
VPS39-207ENST00000563692 C2CD2Q9Y426 696 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 MICAL3Q7RTP6 2002 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 SIP14410 1827 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 PTPRJQ12913 1337 aa9.54□□□□□ -0.88
VPS39-207ENST00000563692 TMCO5BA8MYB1 307 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 HOXA2O43364 376 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 XPOTO43592 962 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 BUB1O43683 1085 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NPTXRO95502 500 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 FTLP02792 175 aaPredicted RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 TCP1P17987 556 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 HOXA11P31270 313 aaPredicted RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 MYL6P60660 151 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 TFF2Q03403 129 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 TMEM132DQ14C87 1099 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 SLC10A6Q3KNW5 377 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 PAN2Q504Q3 1202 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 ZNF667Q5HYK9 610 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 SPOUT1Q5T280 376 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 JADE1Q6IE81 842 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 TRIM72Q6ZMU5 477 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NOP9Q86U38 636 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 SLC47A2Q86VL8 602 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 HACE1Q8IYU2 909 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 ABI1Q8IZP0 508 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 TTC39CQ8N584 583 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 EPS8L1Q8TE68 723 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 TMEM40Q8WWA1 233 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 LINC01599Q8WXQ3 324 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 CLP1Q92989 425 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 ZNF689Q96CS4 500 aaPredicted RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 TRIM11Q96F44 468 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 RPGRIP1Q96KN7 1286 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 CARD6Q9BX69 1037 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 DNAI2Q9GZS0 605 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NIF3L1Q9GZT8 377 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 LMAN2LQ9H0V9 348 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 ISCUQ9H1K1 167 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 FAM124BQ9H5Z6 455 aaPredicted RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 NSUN3Q9H649 340 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 CDHR5Q9HBB8 845 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 AAASQ9NRG9 546 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 RNF14Q9UBS8 474 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NOCTQ9UK39 431 aaKnown RBP9.53□□□□□ -0.88
VPS39-207ENST00000563692 ITGA11Q9UKX5 1188 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NENFQ9UMX5 172 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 CNTN6Q9UQ52 1028 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 NUB1Q9Y5A7 615 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 UNC80Q8N2C7 3258 aa9.53□□□□□ -0.88
VPS39-207ENST00000563692 PRUNE2Q8WUY3 3088 aa9.52□□□□□ -0.88
VPS39-207ENST00000563692 CHD9Q3L8U1 2897 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 EYSQ5T1H1 3165 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CTAGE15A4D2H0 777 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 TBKBP1A7MCY6 615 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 C5orf67F2Z3F1 127 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 TNFRSF10AO00220 468 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 ENC1O14682 589 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 FANCGO15287 622 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 NCK2O43639 380 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PALMO75781 387 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 ATP1A1P05023 1023 aaKnown RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 CTAGE8P0CG41 777 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 ATF7P17544 494 aaPredicted RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 ACO1P21399 889 aaKnown RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 FGFR4P22455 802 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PAFAH1B1P43034 410 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 MYO1EQ12965 1108 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 TCEAL1Q15170 157 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms