RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 RBP5P82980 135 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 PSMD2Q13200 908 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 SNRNP35Q16560 246 aaKnown RBP16.87■□□□□ 0.29
VPS39-203ENST00000561797 BMT2Q1RMZ1 405 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 CYP4A22Q5TCH4 519 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 CENPPQ6IPU0 288 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 TTC9BQ8N6N2 239 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 XXYLT1Q8NBI6 393 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 KIAA0895Q8NCT3 520 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 TCEAL4Q96EI5 215 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 RTP3Q9BQQ7 232 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 ZCWPW1Q9H0M4 648 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 SIX4Q9UIU6 781 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 OBSL1O75147 1896 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 FAM237AA0A1B0GTK4 181 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 HUS1O60921 280 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 SOAT2O75908 522 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 RPN1P04843 607 aaKnown RBP16.86■□□□□ 0.29
VPS39-203ENST00000561797 DLATP10515 647 aaKnown RBP16.86■□□□□ 0.29
VPS39-203ENST00000561797 TNNI1P19237 187 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 AVPR2P30518 371 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 ALDH1A3P47895 512 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 EPHB3P54753 998 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 NUCB2P80303 420 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 DUOXA2Q1HG44 320 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 PRSS36Q5K4E3 855 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 IER5LQ5T953 404 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 MTSS1LQ765P7 747 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 PDZD4Q76G19 769 aaPredicted RBP16.86■□□□□ 0.29
VPS39-203ENST00000561797 PDCL2Q8N4E4 241 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 LRRC52Q8N7C0 313 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 CXorf38Q8TB03 319 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 CCDC127Q96BQ5 260 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 FAM122AQ96E09 287 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 FNBP1Q96RU3 617 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 KXD1Q9BQD3 176 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 AVENQ9NQS1 362 aaPredicted RBP16.86■□□□□ 0.29
VPS39-203ENST00000561797 L1RE1Q9UN81 338 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 SNX9Q9Y5X1 595 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 MIA3Q5JRA6 1907 aa16.86■□□□□ 0.29
VPS39-203ENST00000561797 NUP210Q8TEM1 1887 aaPredicted RBP16.85■□□□□ 0.29
VPS39-203ENST00000561797 ZNF197O14709 1029 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 EXOC3O60645 756 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 ZNF202O95125 648 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 MYL1P05976 194 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 SRFP11831 508 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 GJA1P17302 382 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 CCR2P41597 374 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 CYP24A1Q07973 514 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 PLD1Q13393 1074 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 POTEHQ6S545 545 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 KRBA2Q6ZNG9 492 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 LRRTM3Q86VH5 581 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 WDR49Q8IV35 697 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 SIX5Q8N196 739 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 FLCNQ8NFG4 579 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 CCDC47Q96A33 483 aaKnown RBP16.85■□□□□ 0.29
VPS39-203ENST00000561797 SEPT5Q99719 369 aaPredicted RBP16.85■□□□□ 0.29
VPS39-203ENST00000561797 ASAH2Q9NR71 780 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 CGNQ9P2M7 1197 aaKnown RBP16.85■□□□□ 0.29
VPS39-203ENST00000561797 CA14Q9ULX7 337 aa16.85■□□□□ 0.29
VPS39-203ENST00000561797 ARIH1Q9Y4X5 557 aaPredicted RBP16.85■□□□□ 0.29
VPS39-203ENST00000561797 STK25O00506 426 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 NRG2O14511 850 aaPredicted RBP16.84■□□□□ 0.29
VPS39-203ENST00000561797 MYO1EQ12965 1108 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 PSMD6Q15008 389 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 MGAT5BQ3V5L5 792 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 C12orf56Q8IXR9 622 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 DCP1BQ8IZD4 617 aaKnown RBP16.84■□□□□ 0.29
VPS39-203ENST00000561797 GPR152Q8TDT2 470 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 HPDLQ96IR7 371 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 CGRRF1Q99675 332 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 DNAJC25Q9H1X3 360 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 GDAP2Q9NXN4 497 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 DDX43Q9NXZ2 648 aaKnown RBP16.84■□□□□ 0.29
VPS39-203ENST00000561797 GDE1Q9NZC3 331 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 WNT16Q9UBV4 365 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 PTPRDP23468 1912 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 GREB1Q4ZG55 1949 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 TICRRQ7Z2Z1 1910 aa16.84■□□□□ 0.29
VPS39-203ENST00000561797 GOLGA6L4A6NEF3 574 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 ACAT1P24752 427 aaKnown RBP16.83■□□□□ 0.28
VPS39-203ENST00000561797 PLA2G5P39877 138 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 GPC5P78333 572 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 TSPY1Q01534 308 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 DPYDQ12882 1025 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 TRAPPC11Q7Z392 1133 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 TMEM86AQ8N2M4 240 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 LEMD2Q8NC56 503 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 GOLGA5Q8TBA6 731 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 FAM200AQ8TCP9 573 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 KCNH6Q9H252 994 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 KCTD10Q9H3F6 313 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 ZDBF2Q9HCK1 2354 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 TMLHEQ9NVH6 421 aa16.83■□□□□ 0.28
VPS39-203ENST00000561797 ABI2Q9NYB9 513 aaPredicted RBP16.83■□□□□ 0.28
VPS39-203ENST00000561797 MYH10P35580 1976 aa16.82■□□□□ 0.28
VPS39-203ENST00000561797 KIF26AQ9ULI4 1882 aaPredicted RBP16.82■□□□□ 0.28
VPS39-203ENST00000561797 COL4A3Q01955 1670 aa16.82■□□□□ 0.28
VPS39-203ENST00000561797 KRBA1A5PL33 1030 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms