RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	RUFY2	Q8WXA3	655 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	IP6K1	Q92551	441 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	RILPL2	Q969X0	211 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	GPATCH3	Q96I76	525 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	HIST1H2AH	Q96KK5	128 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	PKNOX2	Q96KN3	472 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858		Q96MF0	132 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	HIST1H2AJ	Q99878	128 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	ADAM2	Q99965	735 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	HEPH	Q9BQS7	1158 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	TEX101	Q9BY14	249 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	KRTAP2-2	Q9BYT5	123 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	IL1RAPL2	Q9NP60	686 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	HYPK	Q9NX55	129 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	MIS18A	Q9NYP9	233 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	HMG20B	Q9P0W2	317 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	CHPF2	Q9P2E5	772 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	SMC3	Q9UQE7	1217 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	CNPY2	Q9Y2B0	182 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	MAP3K2	Q9Y2U5	619 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	EID1	Q9Y6B2	187 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	LRP6	O75581	1613 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	ITGB4	P16144	1822 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	RREB1	Q92766	1687 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	NPHP3	Q7Z494	1330 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	MEGF6	O75095	1541 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	KCP	Q6ZWJ8	1503 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	KIAA1551	Q9HCM1	1747 aa		2.88	□□□□□ -1.95
SPG11-223	ENST00000560858	LAMB1	P07942	1786 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858		A0A0A6YYJ9	748 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	PI4KAP2	A4QPH2	592 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	TRIM38	O00635	465 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	RNMT	O43148	476 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	AP5Z1	O43299	807 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CTIF	O43310	598 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	FIBP	O43427	364 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	SURF6	O75683	361 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	KRT37	O76014	449 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ADCY5	O95622	1261 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	PTMA	P06454	111 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	NBPF7	P0C2Y1	421 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CCDC192	P0DO97	292 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	GAA	P10253	952 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	KCNA6	P17658	529 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CAST	P20810	708 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	GJB2	P29033	226 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	PTGER1	P34995	402 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	KRT85	P78386	507 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	MRPS35	P82673	323 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ARID5A	Q03989	594 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	DUSP2	Q05923	314 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ADCY2	Q08462	1091 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	NECTIN1	Q15223	517 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	SYCP1	Q15431	976 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ME3	Q16798	604 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ADCK5	Q3MIX3	580 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	AKNAD1	Q5T1N1	836 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CYB5RL	Q6IPT4	315 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CRELD2	Q6UXH1	353 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ZNF788	Q6ZQV5	615 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	GPRIN1	Q7Z2K8	1008 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CCDC83	Q8IWF9	413 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	UNC5B	Q8IZJ1	945 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CLASRP	Q8N2M8	674 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	PI4KAP1	Q8N8J0	262 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	PDPR	Q8NCN5	879 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	NGDN	Q8NEJ9	315 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	LINS1	Q8NG48	757 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	OR10H5	Q8NGA6	315 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	TDRD7	Q8NHU6	1098 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	KIAA1524	Q8TCG1	905 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	MAP4K1	Q92918	833 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	EVI5L	Q96CN4	794 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	JAKMIP1	Q96N16	626 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	FCRL4	Q96PJ5	515 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	NOL10	Q9BSC4	688 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	DHRS4	Q9BTZ2	278 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ADGRE3	Q9BY15	652 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	KLK15	Q9H2R5	256 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	MTG2	Q9H4K7	406 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	DIAPH3	Q9NSV4	1193 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ECHDC1	Q9NTX5	307 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	DDX19A	Q9NUU7	478 aa	Known RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	DBF4	Q9UBU7	674 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	USP15	Q9Y4E8	981 aa	Predicted RBP	2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	ROBO1	Q9Y6N7	1651 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	MYH1	P12882	1939 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	SALL1	Q9NSC2	1324 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	MAST2	Q6P0Q8	1798 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	CARMIL3	Q8ND23	1372 aa		2.87	□□□□□ -1.95
SPG11-223	ENST00000560858	NUP98	P52948	1817 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	ATRN	O75882	1429 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	TNS2	Q63HR2	1409 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	SCN7A	Q01118	1682 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	C1orf167	Q5SNV9	1468 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858		A0A0D9SFI3	127 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	GRM8	O00222	908 aa		2.86	□□□□□ -1.95
SPG11-223	ENST00000560858	ADCY3	O60266	1144 aa		2.86	□□□□□ -1.95

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms