RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KIAA2013Q8IYS2 634 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 GSTCDQ8NEC7 633 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 IQCDQ96DY2 449 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 MED15Q96RN5 788 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 FAM213AQ9BRX8 229 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 COLEC11Q9BWP8 271 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 PRKD2Q9BZL6 878 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 XPO4Q9C0E2 1151 aaKnown RBP12.71□□□□□ -0.37
LDLR-212ENST00000560467 CCDC113Q9H0I3 377 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 NDST4Q9H3R1 872 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 TAB2Q9NYJ8 693 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 KLK14Q9P0G3 267 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 R3HCC1Q9Y3T6 440 aaKnown RBP12.71□□□□□ -0.37
LDLR-212ENST00000560467 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.71□□□□□ -0.374e-8■□□□□ 11.2
LDLR-212ENST00000560467 STYXL1Q9Y6J8 313 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 NUMBLQ9Y6R0 609 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 C2orf16Q68DN1 1984 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 A0A0B4J269 797 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 LGALS16A8MUM7 142 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ANKRD63C9JTQ0 380 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 OGTO15294 1046 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 LRRN2O75325 713 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 AKAP3O75969 853 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 PAPLNO95428 1278 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 NPTXRO95502 500 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 AFPP02771 609 aaKnown RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 GLULP15104 373 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ARF4P18085 180 aaPredicted RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 CDC25BP30305 580 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 VAMP7P51809 220 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 MARSP56192 900 aaKnown RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 NTHL1P78549 312 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ENPEPQ07075 957 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 TSR1Q2NL82 804 aaKnown RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 RTP2Q5QGT7 225 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 LILRA6Q6PI73 481 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ZC3H3Q8IXZ2 948 aaKnown RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 HDAC7Q8WUI4 952 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 NXPE3Q969Y0 559 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 TRIM44Q96DX7 344 aaPredicted RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 PAAF1Q9BRP4 392 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 CBWD1Q9BRT8 395 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 RPP25Q9BUL9 199 aaKnown RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 CCDC94Q9BW85 323 aaPredicted RBP12.7□□□□□ -0.38
LDLR-212ENST00000560467 PLEKHA4Q9H4M7 779 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ZDHHC7Q9NXF8 308 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 DLGAP2Q9P1A6 1054 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 ADAM28Q9UKQ2 775 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 GIT1Q9Y2X7 761 aa12.7□□□□□ -0.38
LDLR-212ENST00000560467 A0A1B0GTH6 734 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 MED19A0JLT2 244 aaPredicted RBP12.69□□□□□ -0.38
LDLR-212ENST00000560467 ZMYND10O75800 440 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 SP9P0CG40 484 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 FSHRP23945 695 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 AP3M2P53677 418 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 YARSP54577 528 aaKnown RBP12.69□□□□□ -0.38
LDLR-212ENST00000560467 POU5F1Q01860 360 aaKnown RBP12.69□□□□□ -0.38
LDLR-212ENST00000560467 MCL1Q07820 350 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 NR1I3Q14994 352 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 USP41Q3LFD5 358 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 PHLDB3Q6NSJ2 640 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 SLC27A1Q6PCB7 646 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 DCLRE1AQ6PJP8 1040 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 TAS1R3Q7RTX0 852 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 IRF2BP1Q8IU81 584 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 TRIM59Q8IWR1 403 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 ZNF397Q8NF99 534 aaPredicted RBP12.69□□□□□ -0.38
LDLR-212ENST00000560467 HASPINQ8TF76 798 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 SAAL1Q96ER3 474 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 HINFPQ9BQA5 517 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 NUP58Q9BVL2 599 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 HSD3B7Q9H2F3 369 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 RTN4Q9NQC3 1192 aaKnown RBP12.69□□□□□ -0.38
LDLR-212ENST00000560467 SLC2A4RGQ9NR83 387 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.69□□□□□ -0.38
LDLR-212ENST00000560467 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.69□□□□□ -0.38
LDLR-212ENST00000560467 FNIP2Q9P278 1114 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 IMPACTQ9P2X3 320 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 SIT1Q9Y3P8 196 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 ZMYM2Q9UBW7 1377 aa12.69□□□□□ -0.38
LDLR-212ENST00000560467 DMXL1Q9Y485 3027 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 A0A1B0GUA9 196 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 GOLGA8IPA6NC78 632 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 CASTOR2A6NHX0 329 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 GOLGA8JA6NMD2 632 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 IL18RAPO95256 599 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 CLTAP09496 248 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 TNNI1P19237 187 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 ADSSP30520 456 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 GTF2H1P32780 548 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 KCNH2Q12809 1159 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 BFSP1Q12934 665 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 GRIK3Q13003 919 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 TRIM14Q14142 442 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 SPECC1LQ69YQ0 1117 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 PARM1Q6UWI2 310 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 GRASPQ7Z6J2 395 aaPredicted RBP12.68□□□□□ -0.38
LDLR-212ENST00000560467 C1orf210Q8IVY1 113 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 CD302Q8IX05 232 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 CCDC150Q8NCX0 1101 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms