RNA–Protein interactions for RNA: ENST00000560353.1

APH1B-208, Transcript of aph-1 homolog B, gamma-secretase subunit, human

TSL 3

Gene APH1B, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APH1B-208	ENST00000560353	PRAMEF12	O95522	483 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	HOXD12	P35452	270 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	NLRP5	P59047	1200 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	GFPT1	Q06210	699 aa	Predicted RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	NECTIN1	Q15223	517 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	DCAF4L1	Q3SXM0	396 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	SPDYC	Q5MJ68	293 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	LARP1B	Q659C4	914 aa	Known RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	GAREM2	Q75VX8	874 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	DHX32	Q7L7V1	743 aa	Known RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	TPH2	Q8IWU9	490 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	LSM14A	Q8ND56	463 aa	Known RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	BEST2	Q8NFU1	509 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	CHFR	Q96EP1	664 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	DYDC2	Q96IM9	177 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	GTPBP2	Q9BX10	602 aa	Known RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	TPSD1	Q9BZJ3	242 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	EBF3	Q9H4W6	596 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	TASP1	Q9H6P5	420 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	GOLGA2P5	Q9HBQ8	144 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	HPS4	Q9NQG7	708 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	SH3GLB2	Q9NR46	395 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	ANKEF1	Q9NU02	776 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	VPS54	Q9P1Q0	977 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	SLC6A14	Q9UN76	642 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	NUB1	Q9Y5A7	615 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353	NUP205	Q92621	2012 aa		11.28	□□□□□ -0.6
APH1B-208	ENST00000560353		A0A087WV48	116 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	OTOL1	A6NHN0	477 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	PPP1R3G	B7ZBB8	358 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	PODXL	O00592	558 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	ATXN7	O15265	892 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CFI	P05156	583 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	RPL9	P32969	192 aa	Known RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CTTN	Q14247	550 aa	Known RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	NBR1	Q14596	966 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CDCA2	Q69YH5	1023 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	ANO7	Q6IWH7	933 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	RASSF3	Q86WH2	238 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	DAGLB	Q8NCG7	672 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CEP76	Q8TAP6	659 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	DDX12P	Q92771	950 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	SUSD3	Q96L08	255 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CNOT6L	Q96LI5	555 aa	Known RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	CCDC43	Q96MW1	224 aa	Known RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	TBC1D32	Q96NH3	1257 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	LSG1	Q9H089	658 aa	Known RBP	11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	DNAJC25	Q9H1X3	360 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	C2orf40	Q9H1Z8	148 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	KCNMB3	Q9NPA1	279 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	TMEM74B	Q9NUR3	256 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	ZMYM5	Q9UJ78	669 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	TBX20	Q9UMR3	447 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	PCDHA4	Q9UN74	947 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	PCDHB9	Q9Y5E1	797 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353	ABCA7	Q8IZY2	2146 aa		11.27	□□□□□ -0.61
APH1B-208	ENST00000560353		J3QKU1	62 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	ACKR2	O00590	384 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SLC37A4	O43826	429 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	MARCH6	O60337	910 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SLITRK3	O94933	977 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	LYPLA2	O95372	231 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	IGHD	P01880	384 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	FTH1P19	P0C7X4	201 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	CD59	P13987	128 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	GABRR2	P28476	465 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	MARCKS	P29966	332 aa	Predicted RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	PTGER3	P43115	390 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SOX4	Q06945	474 aa	Predicted RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	DUSP4	Q13115	394 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	PSMD2	Q13200	908 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SLC14A1	Q13336	389 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	RNF20	Q5VTR2	975 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	ITIH5	Q86UX2	942 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	LURAP1L	Q8IV03	231 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SCUBE3	Q8IX30	993 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	OLIG1	Q8TAK6	271 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	PSMG2	Q969U7	264 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	SPACA7	Q96KW9	195 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	TCEANC2	Q96MN5	208 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	RNF26	Q9BY78	433 aa	Predicted RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	PILRB	Q9UKJ0	227 aa		11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	APOBEC2	Q9Y235	224 aa	Known RBP	11.26	□□□□□ -0.61
APH1B-208	ENST00000560353	URB1	O60287	2271 aa	Known RBP	11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	ALDH1A2	O94788	518 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	SERPINF2	P08697	491 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	GJA4	P35212	333 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	YARS	P54577	528 aa	Known RBP	11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	PDGFRL	Q15198	375 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	DUOXA1	Q1HG43	343 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	XKR4	Q5GH76	650 aa		11.25	□□□□□ -0.61
APH1B-208	ENST00000560353	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms