RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 GDF3Q9NR23 364 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 NUB1Q9Y5A7 615 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 B4GALT5O43286 388 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 ASS1P00966 412 aaKnown RBP18.95■□□□□ 0.62
SNX1-208ENST00000559844 TNNC2P02585 160 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 CD52P31358 61 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 EPHB4P54760 987 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 NFX1Q12986 1120 aaKnown RBP18.95■□□□□ 0.62
SNX1-208ENST00000559844 PAK2Q13177 524 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 SGSM1Q2NKQ1 1148 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 FAM212AQ96EL1 285 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 ST3GAL5Q9UNP4 418 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 SQORQ9Y6N5 450 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 KRIT1O00522 736 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 HEXIM1O94992 359 aaKnown RBP18.94■□□□□ 0.62
SNX1-208ENST00000559844 CYP1A1P04798 512 aaPredicted RBP18.94■□□□□ 0.62
SNX1-208ENST00000559844 TMEM191BP0C7N4 346 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 SYN1P17600 705 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 TRPC3Q13507 836 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 GPNMBQ14956 572 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 PPP2R5EQ16537 467 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 EMBQ6PCB8 327 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 TMEM270Q6UE05 265 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 THNSL1Q8IYQ7 743 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 RBBP8NLQ8NC74 664 aaPredicted RBP18.94■□□□□ 0.62
SNX1-208ENST00000559844 ANKRD36BP1Q96IX9 119 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 MTMR12Q9C0I1 747 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 CDT1Q9H211 546 aa18.94■□□□□ 0.62
SNX1-208ENST00000559844 RPF1Q9H9Y2 349 aaKnown RBP18.94■□□□□ 0.62
SNX1-208ENST00000559844 CNOT8Q9UFF9 292 aaKnown RBP18.94■□□□□ 0.62
SNX1-208ENST00000559844 GPR182O15218 404 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 TSPAN1O60635 241 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 PARNO95453 639 aaKnown RBP18.93■□□□□ 0.62
SNX1-208ENST00000559844 MYBL2P10244 700 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 MCF2P10911 925 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 GNA15P30679 374 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 MESDQ14696 234 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 PCBP1Q15365 356 aaKnown RBP eCLIP18.93■□□□□ 0.62
SNX1-208ENST00000559844 AMHR2Q16671 573 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 KYAT1Q16773 422 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 DEFB128Q7Z7B8 93 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 KLHL7Q8IXQ5 586 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 SLITRK6Q9H5Y7 841 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 ZMYND8Q9ULU4 1186 aaPredicted RBP18.93■□□□□ 0.62
SNX1-208ENST00000559844 PADI3Q9ULW8 664 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 CAPN15O75808 1086 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 NSFP46459 744 aaKnown RBP18.93■□□□□ 0.62
SNX1-208ENST00000559844 CENPCQ03188 943 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 EEF1DP3Q658K8 133 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 MFSD5Q6N075 450 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 MCOLN2Q8IZK6 566 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 TMEM199Q8N511 208 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 UBR7Q8N806 425 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 RNPC3Q96LT9 517 aaKnown RBP18.93■□□□□ 0.62
SNX1-208ENST00000559844 ZSWIM1Q9BR11 485 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 NIF3L1Q9GZT8 377 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 ERVK-5Q9HDB9 667 aa18.93■□□□□ 0.62
SNX1-208ENST00000559844 TMEM110-MUSTN1A8MSY1 372 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 ATMINO43313 823 aaPredicted RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 CSF2RAP15509 400 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 ARF4P18085 180 aaPredicted RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 COMTP21964 271 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 CTNNA2P26232 953 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 OAS2P29728 719 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 YWHAEP62258 255 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 NNTQ13423 1086 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 EIF1ADQ8N9N8 165 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 CCDC26Q8TAB7 109 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.92■□□□□ 0.622e-6■■■■■ 29
SNX1-208ENST00000559844 CPB2Q96IY4 423 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 PIN4Q9Y237 131 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 GOLGA6L10A0A0M3HER8 536 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 FAM170AA1A519 330 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 CCDC66A2RUB6 948 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 RAD51CO43502 376 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 CST3P01034 146 aaPredicted RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 GLI1P08151 1106 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 RFC2P35250 354 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 MYL6P60660 151 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 FAM193AP78312 1265 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 TFAMQ00059 246 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 GUCY2DQ02846 1103 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 LIN9Q5TKA1 542 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 DCAF12L1Q5VU92 463 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 GSPT2Q8IYD1 628 aaKnown RBP18.92■□□□□ 0.62
SNX1-208ENST00000559844 BADQ92934 168 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 VCPIP1Q96JH7 1222 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 AP1M1Q9BXS5 423 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 EPB41L5Q9HCM4 733 aa18.92■□□□□ 0.62
SNX1-208ENST00000559844 CEP290O15078 2479 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 FGGP02679 453 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 ZNF132P52740 706 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 MRPS25P82663 173 aaKnown RBP18.91■□□□□ 0.62
SNX1-208ENST00000559844 HSP90B2PQ58FF3 399 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 NAA35Q5VZE5 725 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 MAATS1Q7Z4T9 603 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 CAVIN3Q969G5 261 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 FAXDC2Q96IV6 333 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 HPCAL4Q9UM19 191 aa18.91■□□□□ 0.62
SNX1-208ENST00000559844 MICAL3Q7RTP6 2002 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms