RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PNPLA4P41247 253 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 RPS9P46781 194 aaKnown RBP15.8■□□□□ 0.12
SHMT2-235ENST00000557740 TFAMQ00059 246 aaKnown RBP15.8■□□□□ 0.12
SHMT2-235ENST00000557740 KCNA1Q09470 495 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 MGAT5BQ3V5L5 792 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 ARHGAP15Q53QZ3 475 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 WSCD1Q658N2 575 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 CRELD2Q6UXH1 353 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-235ENST00000557740 BRSK2Q8IWQ3 736 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 PDILTQ8N807 584 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 NOC3LQ8WTT2 800 aaKnown RBP15.8■□□□□ 0.12
SHMT2-235ENST00000557740 PSMG2Q969U7 264 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 SAAL1Q96ER3 474 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 LRRC3Q9BY71 257 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 PANK2Q9BZ23 570 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 ZCWPW1Q9H0M4 648 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 ATXN3LQ9H3M9 355 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 PANK4Q9NVE7 773 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 FBXO4Q9UKT5 387 aa15.8■□□□□ 0.12
SHMT2-235ENST00000557740 NDRG2Q9UN36 371 aaKnown RBP15.8■□□□□ 0.12
SHMT2-235ENST00000557740 A0A087X0B3 334 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 HEPACAM2A8MVW5 462 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 KPNA7A9QM74 516 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 DPYSL4O14531 572 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 KINO60870 393 aaKnown RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 LDHAP00338 332 aaKnown RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 NASPP49321 788 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 TUFMP49411 452 aaKnown RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 CASP5P51878 434 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 CSTF1Q05048 431 aaKnown RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 SMARCB1Q12824 385 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 TAF12Q16514 161 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 ZNF528Q3MIS6 628 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 STXBP4Q6ZWJ1 553 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 DNAJB7Q7Z6W7 309 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 MFSD6LQ8IWD5 586 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 CCDC65Q8IXS2 484 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 MAML2Q8IZL2 1156 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 CLDN23Q96B33 292 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 GCNAQ96QF7 691 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 HINFPQ9BQA5 517 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 LPIN3Q9BQK8 851 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 BACH2Q9BYV9 841 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 ZNF334Q9HCZ1 680 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 TRPV5Q9NQA5 729 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 RBAKQ9NYW8 714 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-235ENST00000557740 PIAS3Q9Y6X2 628 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 CFAP54Q96N23 3096 aa15.79■□□□□ 0.12
SHMT2-235ENST00000557740 MYO15AQ9UKN7 3530 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 MIA3Q5JRA6 1907 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 VPS13AQ96RL7 3174 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 F5P12259 2224 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 FRMD3A2A2Y4 597 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 GARTP22102 1010 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 GABRR2P28476 465 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 POLR2BP30876 1174 aaKnown RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 CDR1P51861 262 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 TSPY1Q01534 308 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 STXBP5Q5T5C0 1151 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 GAREM2Q75VX8 874 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 DCP1BQ8IZD4 617 aaKnown RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 CSGALNACT1Q8TDX6 532 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 C2orf15Q8WU43 125 aaKnown RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 CACTINQ8WUQ7 758 aaKnown RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 FAM3CQ92520 227 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 ZNF396Q96N95 335 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 FGFBP2Q9BYJ0 223 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 LRRC27Q9C0I9 530 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 TMEM206Q9H813 350 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 ABI2Q9NYB9 513 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-235ENST00000557740 CACNA1IQ9P0X4 2223 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 SPTBN4Q9H254 2564 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 TSC2P49815 1807 aa15.78■□□□□ 0.12
SHMT2-235ENST00000557740 NCANO14594 1321 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 GOLGA8IPA6NC78 632 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 GOLGA8JA6NMD2 632 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 SPTLC2O15270 562 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 EXTL3O43909 919 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 HUS1O60921 280 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ITGB3P05106 788 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ATF6P18850 670 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 CDC25CP30307 473 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 BFSP1Q12934 665 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 GPR158Q5T848 1215 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ARID3BQ8IVW6 561 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-235ENST00000557740 LINC00301Q8NCQ3 95 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ZSWIM2Q8NEG5 633 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 SPPL2BQ8TCT7 592 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ATRIPQ8WXE1 791 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 CBWD1Q9BRT8 395 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 ITGA11Q9UKX5 1188 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 AGAP1Q9UPQ3 857 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 PCDHGA2Q9Y5H1 932 aa15.77■□□□□ 0.12
SHMT2-235ENST00000557740 SHISA7A6NL88 538 aa15.76■□□□□ 0.11
SHMT2-235ENST00000557740 CHADO15335 359 aa15.76■□□□□ 0.11
SHMT2-235ENST00000557740 PRPF6O94906 941 aaKnown RBP15.76■□□□□ 0.11
SHMT2-235ENST00000557740 TMEM191BP0C7N4 346 aa15.76■□□□□ 0.11
SHMT2-235ENST00000557740 KPNA1P52294 538 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-235ENST00000557740 WNT7BP56706 349 aa15.76■□□□□ 0.11
SHMT2-235ENST00000557740 CYP4F8P98187 520 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms