RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ITGB3P05106 788 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 RARBP10826 455 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 HOXD10P28358 340 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 POLR2BP30876 1174 aaKnown RBP13.43□□□□□ -0.26
SHMT2-229ENST00000557348 MAN1A1P33908 653 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 DNA2P51530 1060 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 MAATS1Q7Z4T9 603 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 LRRC52Q8N7C0 313 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 BEST2Q8NFU1 509 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 CCDC26Q8TAB7 109 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-229ENST00000557348 PPP1R16BQ96T49 567 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 ZSWIM1Q9BR11 485 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 MIS12Q9H081 205 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 LHX5Q9H2C1 402 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 ACTR5Q9H9F9 607 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-229ENST00000557348 ACP6Q9NPH0 428 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 PARVAQ9NVD7 372 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 SIX4Q9UIU6 781 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 UMODL1Q5DID0 1318 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 MYH10P35580 1976 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 KRIT1O00522 736 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 NPTXRO95502 500 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 C6orf222P0C671 652 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-229ENST00000557348 HOXA11P31270 313 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-229ENST00000557348 PSEN1P49768 467 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 MNAT1P51948 309 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 MESDQ14696 234 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 SNX17Q15036 470 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 WDR72Q3MJ13 1102 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 PLEKHA7Q6IQ23 1121 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 FOXR1Q6PIV2 292 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 PAXIP1Q6ZW49 1069 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-229ENST00000557348 CDR2LQ86X02 465 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-229ENST00000557348 DNAAF5Q86Y56 855 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 HACE1Q8IYU2 909 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 ARFGAP2Q8N6H7 521 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 BCAS4Q8TDM0 211 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 CYFIP2Q96F07 1278 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 KIF12Q96FN5 646 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 HPDLQ96IR7 371 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 MS4A14Q96JA4 679 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 SNX27Q96L92 541 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 RNPC3Q96LT9 517 aaKnown RBP13.42□□□□□ -0.26
SHMT2-229ENST00000557348 RUFY1Q96T51 708 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 CFHR5Q9BXR6 569 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 DPP3Q9NY33 737 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 PCDHA3Q9Y5H8 950 aa13.42□□□□□ -0.26
SHMT2-229ENST00000557348 MEFVO15553 781 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-229ENST00000557348 CD4P01730 458 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 MMP8P22894 467 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 GGCXP38435 758 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 RWDD2BP57060 319 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 PTP4A2Q12974 167 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 PAK2Q13177 524 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 TMEM192Q8IY95 271 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 MREGQ8N565 214 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 DNAJC5GQ8N7S2 189 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 DNAJB3Q8WWF6 145 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 CPA5Q8WXQ8 436 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 CD101Q93033 1021 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 FAM84AQ96KN4 292 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 OSMRQ99650 979 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 LRRC1Q9BTT6 524 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 GOLPH3Q9H4A6 298 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 CREBZFQ9NS37 354 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHMT2-229ENST00000557348 CNTN3Q9P232 1028 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 WDR35Q9P2L0 1181 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 NXF1Q9UBU9 619 aaKnown RBP13.41□□□□□ -0.26
SHMT2-229ENST00000557348 ANAPC7Q9UJX3 599 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 MTUS1Q9ULD2 1270 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 UBQLN1Q9UMX0 589 aaKnown RBP13.41□□□□□ -0.26
SHMT2-229ENST00000557348 EVPLQ92817 2033 aa13.41□□□□□ -0.26
SHMT2-229ENST00000557348 AGPSO00116 658 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 TLR3O15455 904 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 HSF2BPO75031 334 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CSDE1O75534 798 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 PROSCO94903 275 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 GNRH1P01148 92 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CD58P19256 250 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 COMTP21964 271 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CST5P28325 142 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 RDXP35241 583 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CETN2P41208 172 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 PNPLA4P41247 253 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 FLT3LGP49771 235 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 BEX3Q00994 111 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 INCA1Q0VD86 236 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 GNASQ5JWF2 1037 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 RUFY4Q6ZNE9 571 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 SESTD1Q86VW0 696 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 OTUD6BQ8N6M0 293 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CXorf38Q8TB03 319 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 IP6K2Q9UHH9 426 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 GTF2IRD1Q9UHL9 959 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 BARX2Q9UMQ3 279 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 AGAP1Q9UPQ3 857 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 GINS2Q9Y248 185 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 KAT6AQ92794 2004 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms