RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ADGRD2Q7Z7M1 963 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 CCDC150Q8NCX0 1101 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 OR10T2Q8NGX3 314 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 KREMEN1Q96MU8 473 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 NT5C1BQ96P26 610 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 LPIN3Q9BQK8 851 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 CLSTN3Q9BQT9 956 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 LSM14BQ9BX40 385 aaKnown RBP13.73□□□□□ -0.21
SHMT2-227ENST00000557269 MRPL17Q9NRX2 175 aaKnown RBP13.73□□□□□ -0.21
SHMT2-227ENST00000557269 HMGXB4Q9UGU5 601 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 TEX28O15482 410 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 TACC1O75410 805 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 NOL4O94818 638 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 URODP06132 367 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CNPP09543 421 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 OR4Q2P0C623 313 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CD58P19256 250 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 WARSP23381 471 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 ACAT1P24752 427 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CA8P35219 290 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 ORC1Q13415 861 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CUL2Q13617 745 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 SMC1AQ14683 1233 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 PSMD5Q16401 504 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CCDC142Q17RM4 750 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 CTXN3Q4LDR2 81 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 GPR153Q6NV75 609 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 GLYCTKQ8IVS8 523 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 PPM1KQ8N3J5 372 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 UBR7Q8N806 425 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 WHAMMQ8TF30 809 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 MRPL38Q96DV4 380 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 GUCD1Q96NT3 240 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 KLHL5Q96PQ7 755 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 ERGIC2Q96RQ1 377 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 TWNKQ96RR1 684 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 XPO4Q9C0E2 1151 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 LMAN2LQ9H0V9 348 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 DPEP3Q9H4B8 488 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 RXFP1Q9HBX9 757 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 UBE2TQ9NPD8 197 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 NGRNQ9NPE2 291 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 DDX43Q9NXZ2 648 aaKnown RBP13.72□□□□□ -0.21
SHMT2-227ENST00000557269 MTRRQ9UBK8 725 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 STK39Q9UEW8 545 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 FBXL5Q9UKA1 691 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 DSEQ9UL01 958 aa13.72□□□□□ -0.21
SHMT2-227ENST00000557269 PER2O15055 1255 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 ATP2C2O75185 946 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 PDGFRBP09619 1106 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 ACO1P21399 889 aaKnown RBP13.71□□□□□ -0.21
SHMT2-227ENST00000557269 GNL1P36915 607 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-227ENST00000557269 PBX1P40424 430 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 FILIP1LQ4L180 1135 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 KLHDC7AQ5VTJ3 777 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 IQCEQ6IPM2 695 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 ANKS3Q6ZW76 656 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 RBM23Q86U06 439 aaKnown RBP13.71□□□□□ -0.21
SHMT2-227ENST00000557269 LRRTM3Q86VH5 581 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 METTL23Q86XA0 190 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 TMEM86AQ8N2M4 240 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 DEFB123Q8N688 67 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 OR6B3Q8NGW1 331 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 CDX2Q99626 313 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-227ENST00000557269 GANQ9H2C0 597 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 CYP3A43Q9HB55 503 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 CISHQ9NSE2 258 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 FAM207AQ9NSI2 230 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-227ENST00000557269 APEX2Q9UBZ4 518 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 DNAJC12Q9UKB3 198 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 STXBP5LQ9Y2K9 1186 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 BACE2Q9Y5Z0 518 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 FHOD1Q9Y613 1164 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 IRAK3Q9Y616 596 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 MTCH2Q9Y6C9 303 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 CDY1Q9Y6F8 540 aa13.71□□□□□ -0.21
SHMT2-227ENST00000557269 CDH23Q9H251 3354 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 H7C4K7 107 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 RNF225M0QZC1 329 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-227ENST00000557269 FAM163BP0C2L3 166 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 P4HA1P13674 534 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 OR1D2P34982 312 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 GTF2F1P35269 517 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHMT2-227ENST00000557269 NDST1P52848 882 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 ARPP19P56211 112 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PSMC1P62191 440 aaKnown RBP13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PLCB2Q00722 1185 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 GCNT1Q02742 428 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 INCA1Q0VD86 236 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PTPROQ16827 1216 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PDE12Q6L8Q7 609 aaKnown RBP13.7□□□□□ -0.22
SHMT2-227ENST00000557269 ZNF280DQ6N043 979 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 GPR65Q8IYL9 337 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 MYLIPQ8WY64 445 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 FAXDC2Q96IV6 333 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PKMYT1Q99640 499 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 NAA15Q9BXJ9 866 aaKnown RBP13.7□□□□□ -0.22
SHMT2-227ENST00000557269 GPR88Q9GZN0 384 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 ELOVL4Q9GZR5 314 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms