RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CETPP11597 493 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 EIF4BP23588 611 aaKnown RBP14.26□□□□□ -0.13
SHMT2-222ENST00000555774 IL9RQ01113 521 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 CAPSQ13938 189 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 FAM160B1Q5W0V3 765 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 RNF43Q68DV7 783 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 C9orf72Q96LT7 481 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 PWWP2AQ96N64 755 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 MRPL4Q9BYD3 311 aaKnown RBP14.26□□□□□ -0.13
SHMT2-222ENST00000555774 NIF3L1Q9GZT8 377 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 SHOC2Q9UQ13 582 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 EFR3BQ9Y2G0 817 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 CD2APQ9Y5K6 639 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 hCG_1818297A0A087WSY0 165 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 SPDYE16A6NNV3 312 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 PRPF4O43172 522 aaKnown RBP eCLIP14.25□□□□□ -0.131e-8■■■□□ 17.5
SHMT2-222ENST00000555774 ITGAVP06756 1048 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 VCPP55072 806 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 GSCP56915 257 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 CCDC15Q0P6D6 951 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 MPP2Q14168 576 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 MTFR1Q15390 333 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 SGSM1Q2NKQ1 1148 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 PPP1R15BQ5SWA1 713 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 MFSD7Q6UXD7 560 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 POLNQ7Z5Q5 900 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 SRRM1Q8IYB3 904 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 RXFP1Q9HBX9 757 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 PCDH9Q9HC56 1237 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 SAYSD1Q9NPB0 183 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 DNPEPQ9ULA0 475 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 STRIP2Q9ULQ0 834 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 SMG5Q9UPR3 1016 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 ZNF148Q9UQR1 794 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 A0A1B0GUA9 196 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 EXOC1LA0A1B0GW35 172 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 RASA4BC9J798 803 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 RASA4O43374 803 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 MAFO75444 373 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 TOM1L1O75674 476 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 UBOX5O94941 541 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 ATP6V1G2O95670 118 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 GMPSP49915 693 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 ARSEP51690 589 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 YWHAEP62258 255 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 RPL7AP62424 266 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 ZNF252P-AS1Q0IIN9 211 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 BNIP1Q12981 228 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 OASLQ15646 514 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 FAM133BQ5BKY9 247 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 DALRD3Q5D0E6 543 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 TFDP3Q5H9I0 405 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 NOL9Q5SY16 702 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 DCUN1D2Q6PH85 259 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 RGS9BPQ6ZS82 235 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 PCGF5Q86SE9 256 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 APOBEC3FQ8IUX4 373 aaKnown RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 ZNF526Q8TF50 670 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-222ENST00000555774 FAM167AQ96KS9 214 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 CEP83Q9Y592 693 aa14.25□□□□□ -0.13
SHMT2-222ENST00000555774 MAGEB2O15479 319 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 GAS2O43903 313 aaKnown RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 FAM189A1O60320 539 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 EDN1P05305 212 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 ATF7P17544 494 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 SKIV2L2P42285 1042 aaKnown RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 NCALDP61601 193 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 ZFYVE27Q5T4F4 411 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 CDCA2Q69YH5 1023 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 SAMD7Q7Z3H4 446 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 TRABD2AQ86V40 505 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 FAM228AQ86W67 206 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 EXOC8Q8IYI6 725 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 MCEEQ96PE7 176 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 FAM118BQ9BPY3 351 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 FETUBQ9UGM5 382 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 SLC24A2Q9UI40 661 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 IVNS1ABPQ9Y6Y0 642 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 PI4K2BG5E9Z4 385 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 ALOX15BO15296 676 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 KRT10P13645 584 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 NEDD9Q14511 834 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 TMED2Q15363 201 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 DUOXA2Q1HG44 320 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 RNASEH2BQ5TBB1 312 aaKnown RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 IER5Q5VY09 327 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 CENPUQ71F23 418 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 GDAP1Q8TB36 358 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 TCP11Q8WWU5 503 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 FHDC1Q9C0D6 1143 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-222ENST00000555774 ECT2Q9H8V3 914 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 CISHQ9NSE2 258 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 KLHL14Q9P2G3 628 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 TBK1Q9UHD2 729 aa14.24□□□□□ -0.13
SHMT2-222ENST00000555774 OGTO15294 1046 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 FARP2O94887 1054 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 GH1P01241 217 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 NQO1P15559 274 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 PECAM1P16284 738 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 TAC1P20366 129 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms