RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 CASP8AP2Q9UKL3 1982 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 PIK3R2O00459 728 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 GJC1P36383 396 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 TNNT3P45378 269 aaPredicted RBP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 CARSP49589 748 aaKnown RBP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 PHF13Q86YI8 300 aaPredicted RBP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 MTG1Q9BT17 334 aaPredicted RBP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 XPNPEP3Q9NQH7 507 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 FAM53CQ9NYF3 392 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 USTQ9Y2C2 406 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 C2CD2Q9Y426 696 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 CDY2AQ9Y6F7 541 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 MKI67P46013 3256 aaKnown RBP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 SEPT4O43236 478 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 ADAMTS4O75173 837 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 ERLIN1O75477 346 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 ASGR1P07306 291 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 RARBP10826 455 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 MMP8P22894 467 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 DDX42Q86XP3 938 aaKnown RBP eCLIP13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 C12orf29Q8N999 325 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 CD99L2Q8TCZ2 262 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 IFT81Q8WYA0 676 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 OGFRQ9NZT2 677 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 GTF2IRD1Q9UHL9 959 aa13.54□□□□□ -0.24
VIPAS39-206ENST00000553888 SART1O43290 800 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CILPO75339 1184 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 NDST1P52848 882 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 SP3Q02447 781 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 SOX4Q06945 474 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 NOGQ13253 232 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 KCNA10Q16322 511 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 TRIM72Q6ZMU5 477 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 RPS6KC1Q96S38 1066 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 MRPL45Q9BRJ2 306 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CARD9Q9H257 536 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 AVENQ9NQS1 362 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 KLHL11Q9NVR0 708 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 ITGA11Q9UKX5 1188 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 SNX9Q9Y5X1 595 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 GRIN2DO15399 1336 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CYP3A5P20815 502 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CTNNA1P35221 906 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 AFF1P51825 1210 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CRYBB1P53674 252 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 TAS2R40P59535 323 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 RBP5P82980 135 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 OGDHQ02218 1023 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 NFX1Q12986 1120 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CASP8Q14790 479 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 DEFB115Q30KQ5 88 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 PTPN20Q4JDL3 420 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CCDC70Q6NSX1 233 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 UBL4BQ8N7F7 174 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 SMG8Q8ND04 991 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 UBA3Q8TBC4 463 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 CASKIN2Q8WXE0 1202 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 SGSM3Q96HU1 749 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 HHIPL1Q96JK4 782 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 ZFP42Q96MM3 310 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 HERPUD2Q9BSE4 406 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 IPPQ9Y573 584 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 GOLGA8SH3BPF8 625 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 MYO1FO00160 1098 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 TLR3O15455 904 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 YARSP54577 528 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 TNNC1P63316 161 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 ZNF252P-AS1Q0IIN9 211 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 TWF2Q6IBS0 349 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 PLEKHA7Q6IQ23 1121 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 ALKAL1Q6UXT8 129 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 MCEEQ96PE7 176 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 NFU1Q9UMS0 254 aa13.53□□□□□ -0.24
VIPAS39-206ENST00000553888 MAP2K7O14733 419 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 TTI1O43156 1089 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 CHRNA1P02708 482 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 FAM153BP0C7A2 387 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 PTPN11Q06124 597 aaPredicted RBP13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 ZBTB6Q15916 424 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 KYAT1Q16773 422 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 FAM153CQ494X1 144 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 ZNF618Q5T7W0 954 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 LIN9Q5TKA1 542 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 TMEM176AQ96HP8 235 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 HEXIM2Q96MH2 286 aaKnown RBP13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 CPXM1Q96SM3 734 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 TRIM51Q9BSJ1 452 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 WNT8AQ9H1J5 351 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 FAM153AQ9UHL3 310 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 PCDHA3Q9Y5H8 950 aa13.52□□□□□ -0.24
VIPAS39-206ENST00000553888 THSD7BQ9C0I4 1608 aa13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 SMIM28A0A1B0GU29 152 aa13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 MIF4GDA9UHW6 222 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 MYBL1P10243 752 aa13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 SSR1P43307 286 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 MRPS6P82932 125 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 ATP13A4Q4VNC1 1196 aa13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 TMEM35BQ8NCS4 154 aa13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 ACSF2Q96CM8 615 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms