RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CLSTN1O94985 981 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 STAU1O95793 577 aaKnown RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 C8AP07357 584 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 CDR1P51861 262 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 SMAD2Q15796 467 aaKnown RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 ZNF699Q32M78 642 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 PUS10Q3MIT2 529 aaKnown RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 WDR72Q3MJ13 1102 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 CCDC40Q4G0X9 1142 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 DCAF17Q5H9S7 520 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 CCDC183Q5T5S1 534 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 LIN9Q5TKA1 542 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 TCERG1LQ5VWI1 586 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 ELMSAN1Q6PJG2 1045 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 LIMS2Q7Z4I7 341 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 ADGRF2Q8IZF7 708 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 TOP6BLQ8N6T0 577 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 SLC7A14Q8TBB6 771 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 SUSD6Q92537 303 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 SYAP1Q96A49 352 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 PGLYRP2Q96PD5 576 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 MMS19Q96T76 1030 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 SRRTQ9BXP5 876 aaKnown RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 ADAM7Q9H2U9 754 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 TMEM8AQ9HCN3 771 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.15■□□□□ 0.021e-16■■■■■ 250
PTCH1-226ENST00000553011 NXF1Q9UBU9 619 aaKnown RBP15.15■□□□□ 0.02
PTCH1-226ENST00000553011 DPP7Q9UHL4 492 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 POLIQ9UNA4 740 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 PTPRDP23468 1912 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 MYH10P35580 1976 aa15.15■□□□□ 0.02
PTCH1-226ENST00000553011 CCDC195A0A1B0GUA6 201 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 LRRN2O75325 713 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ZMYND10O75800 440 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 SEC24AO95486 1093 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 VNN2O95498 520 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ATF2P15336 505 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ACAT1P24752 427 aaKnown RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ATICP31939 592 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 PIK3CAP42336 1068 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 TNNC1P63316 161 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ITIH3Q06033 890 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ADCY1Q08828 1119 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 TPGS2Q68CL5 300 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 SPOPLQ6IQ16 392 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 CES5AQ6NT32 575 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 RNF19BQ6ZMZ0 732 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 FRMD5Q7Z6J6 570 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 GPR149Q86SP6 731 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 THEM5Q8N1Q8 247 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 TMEM86AQ8N2M4 240 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 CMASQ8NFW8 434 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 TAS1R2Q8TE23 839 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 KBTBD7Q8WVZ9 684 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 SLC35C1Q96A29 364 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ZNF707Q96C28 371 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 NECAB3Q96P71 396 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 PI4K2AQ9BTU6 479 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 OXCT2Q9BYC2 517 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 ZCWPW1Q9H0M4 648 aa15.14■□□□□ 0.01
PTCH1-226ENST00000553011 METTL14Q9HCE5 456 aaKnown RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 DDX43Q9NXZ2 648 aaKnown RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 AFF4Q9UHB7 1163 aaKnown RBP15.14■□□□□ 0.01
PTCH1-226ENST00000553011 GABRDO14764 452 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 ASS1P00966 412 aaKnown RBP15.13■□□□□ 0.01
PTCH1-226ENST00000553011 GTF2H1P32780 548 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 MXI1P50539 228 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 GPR17Q13304 367 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 SGSM1Q2NKQ1 1148 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CBWD6Q4V339 395 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 ZNF667Q5HYK9 610 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CBWD3Q5JTY5 395 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CBWD5Q5RIA9 395 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 PPM1LQ5SGD2 360 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 KRT39Q6A163 491 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CAVIN1Q6NZI2 390 aaKnown RBP15.13■□□□□ 0.01
PTCH1-226ENST00000553011 SCARA5Q6ZMJ2 495 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 DPH6Q7L8W6 267 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 LRRTM3Q86VH5 581 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 SMG7Q92540 1137 aaKnown RBP15.13■□□□□ 0.01
PTCH1-226ENST00000553011 SEMA4DQ92854 862 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 MRPL45Q9BRJ2 306 aaKnown RBP15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CRISPLD1Q9H336 500 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 SMYD3Q9H7B4 428 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 VRTNQ9H8Y1 702 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 CYP4F11Q9HBI6 524 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 ZDHHC7Q9NXF8 308 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 FAM50BQ9Y247 325 aa15.13■□□□□ 0.01
PTCH1-226ENST00000553011 MTMR11A4FU01 709 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 PRRG1O14668 218 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 CCL16O15467 120 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 STX10O60499 249 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 WARSP23381 471 aaKnown RBP15.12■□□□□ 0.01
PTCH1-226ENST00000553011 ERCC5P28715 1186 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-226ENST00000553011 ELF1P32519 619 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 RAP1GAPP47736 663 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 LHX1P48742 406 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 MYL7Q01449 175 aa15.12■□□□□ 0.01
PTCH1-226ENST00000553011 CBX2Q14781 532 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-226ENST00000553011 CCDC142Q17RM4 750 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms