RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 ZCWPW1Q9H0M4 648 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 SMG9Q9H0W8 520 aaKnown RBP12.41□□□□□ -0.42
NEK3-204ENST00000552973 CHRDQ9H2X0 955 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 ASB7Q9H672 318 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 TRPV5Q9NQA5 729 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 PRMT8Q9NR22 394 aaPredicted RBP12.41□□□□□ -0.42
NEK3-204ENST00000552973 RBM12Q9NTZ6 932 aaKnown RBP12.41□□□□□ -0.42
NEK3-204ENST00000552973 CCDC39Q9UFE4 941 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 DERAQ9Y315 318 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 DMDP11532 3685 aa12.41□□□□□ -0.42
NEK3-204ENST00000552973 TRIP11Q15643 1979 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 MYMKA6NI61 221 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 CHADO15335 359 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 LILRB5O75023 590 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 CYP11A1P05108 521 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 ATF6P18850 670 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 ADSSP30520 456 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 TAF6P49848 677 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 WNT7BP56706 349 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 SATB1Q01826 763 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 GAS6Q14393 721 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 RSPO4Q2I0M5 234 aaPredicted RBP12.4□□□□□ -0.42
NEK3-204ENST00000552973 RRAGBQ5VZM2 374 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 SCARA3Q6AZY7 606 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 DGLUCYQ7Z3D6 616 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 ITIH5Q86UX2 942 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 THEM5Q8N1Q8 247 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 NELL1Q92832 810 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 E2F7Q96AV8 911 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 BORCS6Q96GS4 357 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 FAM84AQ96KN4 292 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 ST6GALNAC4Q9H4F1 302 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 MRPL44Q9H9J2 332 aaKnown RBP12.4□□□□□ -0.42
NEK3-204ENST00000552973 FOXD4L1Q9NU39 408 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 GTSE1Q9NYZ3 720 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 FBXO2Q9UK22 296 aaPredicted RBP12.4□□□□□ -0.42
NEK3-204ENST00000552973 SMG5Q9UPR3 1016 aaKnown RBP12.4□□□□□ -0.42
NEK3-204ENST00000552973 C2CD2Q9Y426 696 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 ASB3Q9Y575 518 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 STYXL1Q9Y6J8 313 aa12.4□□□□□ -0.42
NEK3-204ENST00000552973 MED19A0JLT2 244 aaPredicted RBP12.39□□□□□ -0.43
NEK3-204ENST00000552973 GOLGA8IPA6NC78 632 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 GOLGA8JA6NMD2 632 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 HOXC13P31276 330 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 ABCD1P33897 745 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TUFMP49411 452 aaKnown RBP12.39□□□□□ -0.43
NEK3-204ENST00000552973 GPR15P49685 360 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TFAMQ00059 246 aaKnown RBP12.39□□□□□ -0.43
NEK3-204ENST00000552973 TNK2Q07912 1038 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 CUL4AQ13619 759 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 VEPH1Q14D04 833 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TAF12Q16514 161 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 ARHGAP15Q53QZ3 475 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TXNDC11Q6PKC3 985 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 SV2BQ7L1I2 683 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 STKLD1Q8NE28 680 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 NOC3LQ8WTT2 800 aaKnown RBP12.39□□□□□ -0.43
NEK3-204ENST00000552973 SAAL1Q96ER3 474 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 FAM213AQ9BRX8 229 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 EPC1Q9H2F5 836 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TASP1Q9H6P5 420 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 IL21Q9HBE4 155 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 TMLHEQ9NVH6 421 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 ABI2Q9NYB9 513 aaPredicted RBP12.39□□□□□ -0.43
NEK3-204ENST00000552973 DSEQ9UL01 958 aa12.39□□□□□ -0.43
NEK3-204ENST00000552973 KPNA7A9QM74 516 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 SPECC1L-ADORA2AF8WAN1 911 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PPP1R37O75864 691 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 GCNT3O95395 438 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PRAMEF12O95522 483 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 HAPLN1P10915 354 aaPredicted RBP12.38□□□□□ -0.43
NEK3-204ENST00000552973 TDGF1P13385 188 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 IDEP14735 1019 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PAX3P23760 479 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 CXCL12P48061 93 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 CCR3P51677 355 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 CASP5P51878 434 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 DMWDQ09019 674 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 FCHO2Q0JRZ9 810 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 RESTQ13127 1097 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PUM1Q14671 1186 aaKnown RBP eCLIP12.38□□□□□ -0.43
NEK3-204ENST00000552973 PON2Q15165 354 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 WDR44Q5JSH3 913 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 SDHAF4Q5VUM1 108 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PRR23BQ6ZRT6 265 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 Q6ZS52 159 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 BPIFB1Q8TDL5 484 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 DNAJC19Q96DA6 116 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 ACCSQ96QU6 501 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PI4K2AQ9BTU6 479 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 STRA6Q9BX79 667 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 SLC46A2Q9BY10 475 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 FGFBP2Q9BYJ0 223 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 PCIF1Q9H4Z3 704 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 C8orf33Q9H7E9 229 aaPredicted RBP12.38□□□□□ -0.43
NEK3-204ENST00000552973 STK17AQ9UEE5 414 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 USP18Q9UMW8 372 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 MAGED2Q9UNF1 606 aaPredicted RBP12.38□□□□□ -0.43
NEK3-204ENST00000552973 AGAP1Q9UPQ3 857 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 SRPRBQ9Y5M8 271 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms