RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BASP1P80723 227 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 FASTKD3Q14CZ7 662 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 ZDHHC24Q6UX98 284 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CCDC13Q8IYE1 715 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 C4orf33Q8N1A6 199 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 RASGEF1CQ8N431 466 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 TMEM35BQ8NCS4 154 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 TTC16Q8NEE8 873 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PIWIL1Q96J94 861 aaKnown RBP5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CABS1Q96KC9 395 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 B3GNT5Q9BYG0 378 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CEP41Q9BYV8 373 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PDLIM7Q9NR12 457 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 PCDH10Q9P2E7 1040 aa5.92□□□□□ -1.46
LIMA1-215ENST00000552823 CST8O60676 142 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MAFO75444 373 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PROSCO94903 275 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 GAS8O95995 478 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 LDHAP00338 332 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 LGALS2P05162 132 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 RARBP10826 455 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KRT3P12035 628 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 UNGP13051 313 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KRT15P19012 456 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ACO1P21399 889 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ATXN1P54253 815 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 BPIFB4P59827 614 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PPP2R2AP63151 447 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ITIH3Q06033 890 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PPP2R5DQ14738 602 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 FAM133BQ5BKY9 247 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 IER5Q5VY09 327 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CTU1Q7Z7A3 348 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 SCUBE3Q8IX30 993 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KCTD6Q8NC69 237 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF473Q8WTR7 871 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 C18orf25Q96B23 403 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 FAM149B1Q96BN6 582 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CALR3Q96L12 384 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PLVAPQ9BX97 442 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KIF9Q9HAQ2 790 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 INTS9Q9NV88 658 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 NENFQ9UMX5 172 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CNTNAP2Q9UHC6 1331 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 E2F8A0AVK6 867 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 H3BRB1 525 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 H7C0C1 242 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CNMDO75829 334 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CELF2O95319 508 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MYL3P08590 195 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 LCP1P13796 627 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ARF4P18085 180 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ACAT1P24752 427 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ATP5OP48047 213 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 IRX4P78413 519 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MYBPC2Q14324 1141 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PTGISQ16647 500 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 NFIL3Q16649 462 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 PTPN20Q4JDL3 420 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 XRRA1Q6P2D8 792 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 BRSK2Q8IWQ3 736 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 RHOT1Q8IXI2 618 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 C12orf56Q8IXR9 622 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 DNERQ8NFT8 737 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 RDM1Q8NG50 284 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 OR6J1Q8NGC5 347 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ARHGEF2Q92974 986 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 FBXL18Q96ME1 805 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CPXM1Q96SM3 734 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 NIF3L1Q9GZT8 377 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 SDCBP2Q9H190 292 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 VPS33BQ9H267 617 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 SMARCAD1Q9H4L7 1026 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 TUT1Q9H6E5 874 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MAP3K20Q9NYL2 800 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 GRHL1Q9NZI5 618 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 UVRAGQ9P2Y5 699 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 COQ4Q9Y3A0 265 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MYO9BQ13459 2157 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CCDC78A2IDD5 438 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 BTNL10A8MVZ5 291 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 BTBD19C9JJ37 291 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 H0YCG3 227 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 SOCS7O14512 581 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 F7P08709 466 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ZBTB48P10074 688 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 IGFBP6P24592 240 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ERFP50548 548 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 OAZ1P54368 228 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 POU5F1Q01860 360 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 GCNT1Q02742 428 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MTMR3Q13615 1198 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MPZL3Q6UWV2 235 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ZBED8Q8IZ13 594 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CYP4X1Q8N118 509 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 C1orf127Q8N9H9 656 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 FAM71DQ8N9W8 422 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 SLC17A8Q8NDX2 589 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 GPRC5AQ8NFJ5 357 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms