RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CYP24A1Q07973 514 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 CCDC40Q4G0X9 1142 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 EPC2Q52LR7 807 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 CRELD2Q6UXH1 353 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 CHSY3Q70JA7 882 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 DRC7Q8IY82 874 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 SYCP3Q8IZU3 236 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 LRRC71Q8N4P6 559 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 LMO3Q8TAP4 145 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 KIAA1524Q8TCG1 905 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 PARD3BQ8TEW8 1205 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 SYN2Q92777 582 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 NSUN5Q96P11 429 aaKnown RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 RSRP1Q9BUV0 290 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 GANQ9H2C0 597 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 SPC25Q9HBM1 224 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 ABCB6Q9NP58 842 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 XPNPEP3Q9NQH7 507 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 AVENQ9NQS1 362 aaPredicted RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 ABHD10Q9NUJ1 306 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 NOP53Q9NZM5 478 aaKnown RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 ADAMTS1Q9UHI8 967 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 SALL4Q9UJQ4 1053 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 PLAGL2Q9UPG8 496 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 TMA7Q9Y2S6 64 aaKnown RBP9.12□□□□□ -0.95
VPS29-203ENST00000546588 NUB1Q9Y5A7 615 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 TSC2P49815 1807 aa9.12□□□□□ -0.95
VPS29-203ENST00000546588 A0A1B0GUA9 196 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 AKR1B15C9JRZ8 316 aaPredicted RBP9.11□□□□□ -0.95
VPS29-203ENST00000546588 CLIC2O15247 247 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 EXOC3O60645 756 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 PRKCBP05771 671 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 C6orf222P0C671 652 aaPredicted RBP9.11□□□□□ -0.95
VPS29-203ENST00000546588 IQCF3P0C7M6 154 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 ELNP15502 786 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 AXLP30530 894 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 GRK4P32298 578 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 LIG4P49917 911 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 FXR1P51114 621 aaKnown RBP eCLIP9.11□□□□□ -0.95
VPS29-203ENST00000546588 ZBED6P86452 979 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 HYAL2Q12891 473 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 PSMD6Q15008 389 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 SYCP1Q15431 976 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 KYAT1Q16773 422 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 MPZL3Q6UWV2 235 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 ARMCX6Q7L4S7 300 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 USP37Q86T82 979 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 SERINC5Q86VE9 423 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 RHPN2Q8IUC4 686 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 BRSK2Q8IWQ3 736 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 DNAJC5GQ8N7S2 189 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 SPC24Q8NBT2 197 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 RAET1EQ8TD07 263 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 PLEKHO2Q8TD55 490 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 BHMTQ93088 406 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 EEF2KMTQ96G04 330 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 TMEM74Q96NL1 305 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 MAP7D2Q96T17 732 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 KRTAP9-2Q9BYQ4 174 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 MINDY3Q9H8M7 445 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 SIX2Q9NPC8 291 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 TMEM51Q9NW97 253 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 CEP72Q9P209 647 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 CPSF3Q9UKF6 684 aaKnown RBP9.11□□□□□ -0.95
VPS29-203ENST00000546588 SQORQ9Y6N5 450 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 BRCA2P51587 3418 aa9.11□□□□□ -0.95
VPS29-203ENST00000546588 MICAL3Q7RTP6 2002 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 GRIN2DO15399 1336 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TTC26A0AVF1 554 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 C17orf102A2RUQ5 167 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 OGTO15294 1046 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 ARHGAP6O43182 974 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TSPAN1O60635 241 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 ZC3H11AO75152 810 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS29-203ENST00000546588 ASGR1P07306 291 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 MCF2P10911 925 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 CAPN2P17655 700 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 PON1P27169 355 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 CASP14P31944 242 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 EIF4A3P38919 411 aaKnown RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 VAMP7P51809 220 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 AP3M2P53677 418 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 JAM2P57087 298 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 HTRA3P83110 453 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 BEX3Q00994 111 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TNP2Q05952 138 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 MGAT3Q09327 533 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 FOXD4Q12950 439 aaPredicted RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 BMS1Q14692 1282 aaKnown RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 NOLC1Q14978 699 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS29-203ENST00000546588 CBWD6Q4V339 395 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 CBWD3Q5JTY5 395 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 CBWD5Q5RIA9 395 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 COL13A1Q5TAT6 717 aaPredicted RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 TRIM65Q6PJ69 517 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 WDR59Q6PJI9 974 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TRMT1LQ7Z2T5 733 aaKnown RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 RNF180Q86T96 592 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 CBWD2Q8IUF1 395 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 POMGNT1Q8WZA1 660 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms