RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SMYD3Q9H7B4 428 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 IP6K2Q9UHH9 426 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 RBM47A0AV96 593 aaKnown RBP17.3■□□□□ 0.36
COL4A1-204ENST00000543140 F8VP50 259 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 PSTPIP1O43586 416 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 ZEB2O60315 1214 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 SHBGP04278 402 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 CALB1P05937 261 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 GCLCP48506 637 aaPredicted RBP17.3■□□□□ 0.36
COL4A1-204ENST00000543140 SKOR1P84550 965 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 OGDHQ02218 1023 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 ZNF252P-AS1Q0IIN9 211 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 TMEM62Q0P6H9 643 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 SLC10A6Q3KNW5 377 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 KRT71Q3SY84 523 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 CCDC25Q86WR0 208 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 UHMK1Q8TAS1 419 aaKnown RBP17.3■□□□□ 0.36
COL4A1-204ENST00000543140 ACSF2Q96CM8 615 aaPredicted RBP17.3■□□□□ 0.36
COL4A1-204ENST00000543140 MAML3Q96JK9 1138 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 CCDC114Q96M63 670 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 EPB41L4BQ9H329 900 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 SEMA4AQ9H3S1 761 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 TJP2Q9UDY2 1190 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 HMGXB4Q9UGU5 601 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 ASIC3Q9UHC3 531 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 ADCY6O43306 1168 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 RPS6KA5O75582 802 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 MCF2P10911 925 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 VPS41P49754 854 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 GRIK4Q16099 956 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 FAM187BQ17R55 369 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 MARCH8Q5T0T0 291 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 KDM7AQ6ZMT4 941 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 RUNDC3BQ96NL0 473 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 PTPN18Q99952 460 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 OSBPL8Q9BZF1 889 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 DCLK3Q9C098 648 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 MTRF1LQ9UGC7 380 aaKnown RBP17.3■□□□□ 0.36
COL4A1-204ENST00000543140 GRIN2DO15399 1336 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 TRIP11Q15643 1979 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 DOCK3Q8IZD9 2030 aa17.3■□□□□ 0.36
COL4A1-204ENST00000543140 GOLGA8SH3BPF8 625 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 KAZNQ674X7 775 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 PPP1R2P3Q6NXS1 205 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 KATNAL2Q8IYT4 538 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 EMID1Q96A84 441 aaPredicted RBP17.29■□□□□ 0.36
COL4A1-204ENST00000543140 TWNKQ96RR1 684 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 PABPC3Q9H361 631 aaKnown RBP17.29■□□□□ 0.36
COL4A1-204ENST00000543140 MORF4L1Q9UBU8 362 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 CEP83Q9Y592 693 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 DCDC2CA8MYV0 355 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 KRT10P13645 584 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 EIF4BP23588 611 aaKnown RBP17.29■□□□□ 0.36
COL4A1-204ENST00000543140 RAD23BP54727 409 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 ODF2Q5BJF6 829 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 RUFY4Q6ZNE9 571 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 DPH6Q7L8W6 267 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 ANKRD23Q86SG2 305 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 KIAA0319LQ8IZA0 1049 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 OR6J1Q8NGC5 347 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 ART4Q93070 314 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 GBA2Q9HCG7 927 aaPredicted RBP17.29■□□□□ 0.36
COL4A1-204ENST00000543140 SETD4Q9NVD3 440 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 PARP2Q9UGN5 583 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 RSPH14Q9UHP6 348 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 CYTH4Q9UIA0 394 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 NOVA2Q9UNW9 492 aaKnown RBP17.29■□□□□ 0.36
COL4A1-204ENST00000543140 CITO14578 2027 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 ZSWIM8A7E2V4 1837 aa17.29■□□□□ 0.36
COL4A1-204ENST00000543140 TCRBV5S1A1TA0A578 114 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 EIF3HO15372 352 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 MMP3P08254 477 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 POLR2BP30876 1174 aaKnown RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 TNFAIP2Q03169 654 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 POU5F1BQ06416 359 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ADCY2Q08462 1091 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 CALCOCO2Q13137 446 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 KLF1Q13351 362 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ACVR2BQ13705 512 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 SLC29A2Q14542 456 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 KIZQ2M2Z5 673 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 PRAMEF19Q5SWL8 479 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 TXNRD3NBQ6F5E7 133 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 NPLOC4Q8TAT6 608 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 TINF2Q9BSI4 451 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 BCO2Q9BYV7 579 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 PCDHGC3Q9UN70 934 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 SLC45A1Q9Y2W3 748 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 SMIM23A6NLE4 172 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 TSPAN1O60635 241 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 IVLP07476 585 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ATF7P17544 494 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 YWHAEP62258 255 aaKnown RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 GRB14Q14449 540 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 DUSP28Q4G0W2 176 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 PTPN20Q4JDL3 420 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 DENND2CQ68D51 928 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ILDR2Q71H61 639 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ZNF467Q7Z7K2 595 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 EXD1Q8NHP7 514 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms