RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SUFUQ9UMX1 484 aa10.46□□□□□ -0.74
SS18-205ENST00000542420 C5orf60A6NFR6 353 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 SMAPO00193 183 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 RIPK2O43353 540 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 TJP3O95049 919 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 FAM107AO95990 144 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 ASPAP45381 313 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 KRT17Q04695 432 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 ARHGAP1Q07960 439 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 STILQ15468 1287 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 AADACL2Q6P093 401 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 MAMDC4Q6UXC1 1216 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 MMS22LQ6ZRQ5 1243 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 RIBC1Q8N443 379 aaPredicted RBP10.45□□□□□ -0.74
SS18-205ENST00000542420 SH2D3CQ8N5H7 860 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 AFG1LQ8WV93 481 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 PPM1EQ8WY54 764 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 MTMR12Q9C0I1 747 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 CDT1Q9H211 546 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 CCDC134Q9H6E4 229 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 TXNRD2Q9NNW7 524 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 DERAQ9Y315 318 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 ABHD2P08910 425 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 TMOD1P28289 359 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 MYL6P60660 151 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 FKBP1BP68106 108 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 DRP2Q13474 957 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 ZNF667Q5HYK9 610 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 KCTD16Q68DU8 428 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 EFCAB12Q6NXP0 572 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 DNAJC24Q6P3W2 148 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 TAOK1Q7L7X3 1001 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 ZNF410Q86VK4 478 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 P3H4Q92791 437 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 SERPINB12Q96P63 405 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 PLEKHA4Q9H4M7 779 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 C2CD2Q9Y426 696 aa10.45□□□□□ -0.74
SS18-205ENST00000542420 SIGLEC16A6NMB1 481 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 CST3P01034 146 aaPredicted RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 ATF2P15336 505 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 IVDP26440 423 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TNFSF9P41273 254 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 MMP13P45452 471 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 GABRB2P47870 512 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 PDCLQ13371 301 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 ZNF268Q14587 947 aaPredicted RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 ARMCX2Q7L311 632 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 ERICH1Q86X53 443 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 RHPN2Q8IUC4 686 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TTC13Q8NBP0 860 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 GPRC5AQ8NFJ5 357 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 CLMNQ96JQ2 1002 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TRIM31Q9BZY9 425 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 ITGA11Q9UKX5 1188 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TCRBV7S2A1N4TA0A589 114 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 NDUFAB1O14561 156 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TRAPPC3O43617 180 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 KRT7P08729 469 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 SRGAP2CP0DJJ0 459 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 CETPP11597 493 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 EPHX2P34913 555 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 NFX1Q12986 1120 aaKnown RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 TAZQ16635 292 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 AMHR2Q16671 573 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 Q3C1V9 767 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 TAPT1Q6NXT6 567 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 ADAT2Q7Z6V5 191 aaKnown RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 ANKRD23Q86SG2 305 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 NLRP14Q86W24 1093 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 NKD2Q969F2 451 aaPredicted RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 RNF25Q96BH1 459 aaPredicted RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 SLITRK1Q96PX8 696 aa10.44□□□□□ -0.74
SS18-205ENST00000542420 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.44□□□□□ -0.742e-7■■■■■ 220.9
SS18-205ENST00000542420 NOVA2Q9UNW9 492 aaKnown RBP10.44□□□□□ -0.74
SS18-205ENST00000542420 GMNCA6NCL1 334 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 IQCA1LA6NCM1 817 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 RGS16O15492 202 aaPredicted RBP10.43□□□□□ -0.74
SS18-205ENST00000542420 HMGCRP04035 888 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 LGALS2P05162 132 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 RALAP11233 206 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 INCA1Q0VD86 236 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 CBLBQ13191 982 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 RASA2Q15283 850 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 DCAF4L1Q3SXM0 396 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 EAPPQ56P03 285 aaPredicted RBP10.43□□□□□ -0.74
SS18-205ENST00000542420 ZBTB33Q86T24 672 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 VSIG1Q86XK7 387 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 FBXO16Q8IX29 292 aaPredicted RBP10.43□□□□□ -0.74
SS18-205ENST00000542420 TTC25Q96NG3 672 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 SCLT1Q96NL6 688 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 PLEKHA5Q9HAU0 1116 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 ASIC3Q9UHC3 531 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 ACTL7BQ9Y614 415 aa10.43□□□□□ -0.74
SS18-205ENST00000542420 A0A087WUV0 522 aaPredicted RBP10.42□□□□□ -0.74
SS18-205ENST00000542420 RRN3P2A6NIE6 340 aa10.42□□□□□ -0.74
SS18-205ENST00000542420 INO80B-WBP1J3KQ70 363 aa10.42□□□□□ -0.74
SS18-205ENST00000542420 PGK2P07205 417 aa10.42□□□□□ -0.74
SS18-205ENST00000542420 VDRP11473 427 aa10.42□□□□□ -0.74
SS18-205ENST00000542420 KLRC2P26717 231 aa10.42□□□□□ -0.74
SS18-205ENST00000542420 RDXP35241 583 aaKnown RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms