RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 MSTO1Q9BUK6 570 aa16.78■□□□□ 0.28
CLSTN3-213ENST00000541953 ATXN3LQ9H3M9 355 aa16.78■□□□□ 0.28
CLSTN3-213ENST00000541953 CDV3Q9UKY7 258 aaKnown RBP16.78■□□□□ 0.28
CLSTN3-213ENST00000541953 ANO9A1A5B4 782 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 MYBPHLA2RUH7 354 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 PIRO00625 290 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 PLCG1P19174 1290 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 GJB2P29033 226 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 CXCL12P48061 93 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 ACOT2P49753 483 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 LMNB2Q03252 620 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 MYBPC2Q14324 1141 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 KARSQ15046 597 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 SLC39A12Q504Y0 691 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 ZC2HC1CQ53FD0 456 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 LRRTM3Q86VH5 581 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 ZSWIM2Q8NEG5 633 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 CSGALNACT1Q8TDX6 532 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 BORCS6Q96GS4 357 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 CDK5RAP3Q96JB5 506 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 RPF1Q9H9Y2 349 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 POLR3BQ9NW08 1133 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 KCND2Q9NZV8 630 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 LARSQ9P2J5 1176 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 GMEB2Q9UKD1 530 aa16.77■□□□□ 0.28
CLSTN3-213ENST00000541953 CFAP47Q6ZTR5 3102 aa16.77■□□□□ 0.27
CLSTN3-213ENST00000541953 EML5Q05BV3 1969 aa16.77■□□□□ 0.27
CLSTN3-213ENST00000541953 RALGAPA1Q6GYQ0 2036 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 GDF9O60383 454 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 KRT37O76014 449 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 ALDH1A3P47895 512 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 KPNA1P52294 538 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 PLD1Q13393 1074 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 CCINQ13939 588 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 CCDC142Q17RM4 750 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 LAIR1Q6GTX8 287 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 TMEM150AQ86TG1 271 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 YAF2Q8IY57 180 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 EFCAB13Q8IY85 973 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 SPEM1Q8N4L4 309 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 MYCT1Q8N699 235 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 GIPC2Q8TF65 315 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 TMX3Q96JJ7 454 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 SEPT5Q99719 369 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 IER2Q9BTL4 223 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 ZCWPW1Q9H0M4 648 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 ODF2LQ9ULJ1 636 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 CCL26Q9Y258 94 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 FRYQ5TBA9 3013 aa16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 MAP1BP46821 2468 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-213ENST00000541953 ATG2BQ96BY7 2078 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 OTOL1A6NHN0 477 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 FAM13AO94988 1023 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 CYP11A1P05108 521 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 ODC1P11926 461 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 GPR15P49685 360 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 SIM2Q14190 667 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 ARL6IP4Q66PJ3 421 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 NAIF1Q69YI7 327 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 USP49Q70CQ1 688 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 GPR161Q8N6U8 529 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 SECISBP2LQ93073 1101 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 SLC46A2Q9BY10 475 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 GPR88Q9GZN0 384 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 PARVGQ9HBI0 331 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 TMLHEQ9NVH6 421 aa16.75■□□□□ 0.27
CLSTN3-213ENST00000541953 PRR5-ARHGAP8B1AHC4 643 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 EXTL3O43909 919 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 TRAK2O60296 914 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 PAPSS2O95340 614 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 PXNP49023 591 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 NRLP54845 237 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 MLLT6P55198 1093 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 ARHGAP8P85298 464 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 TMEM132DQ14C87 1099 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 MGAT5BQ3V5L5 792 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 WSCD1Q658N2 575 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 TRIM68Q6AZZ1 485 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 CRELD2Q6UXH1 353 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 CELF5Q8N6W0 485 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 RAD54LQ92698 747 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 E2F7Q96AV8 911 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 OXCT2Q9BYC2 517 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 ZHX3Q9H4I2 956 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 C8orf33Q9H7E9 229 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 HPS4Q9NQG7 708 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 SEMA4GQ9NTN9 838 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 SDK1Q7Z5N4 2213 aa16.74■□□□□ 0.27
CLSTN3-213ENST00000541953 MYO16Q9Y6X6 1858 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 USP24Q9UPU5 2620 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 H0YCG3 227 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 RETP07949 1114 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 GTF2BQ00403 316 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 KCNA1Q09470 495 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 LRRC32Q14392 662 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 CCDC6Q16204 474 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 ARHGAP29Q52LW3 1261 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 SDHAF4Q5VUM1 108 aa16.73■□□□□ 0.27
CLSTN3-213ENST00000541953 RALGPS2Q86X27 583 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms