RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 TASP1Q9H6P5 420 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 RPF1Q9H9Y2 349 aaKnown RBP13.31□□□□□ -0.28
SNHG1-216ENST00000541416 GTSE1Q9NYZ3 720 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 SLC8A2Q9UPR5 921 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 SLC27A5Q9Y2P5 690 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 PCDHGA5Q9Y5G8 931 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 NCANO14594 1321 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 MYH11P35749 1972 aa13.31□□□□□ -0.28
SNHG1-216ENST00000541416 MTMR11A4FU01 709 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 HNRNPDLO14979 420 aaKnown RBP13.3□□□□□ -0.28
SNHG1-216ENST00000541416 AXIN1O15169 862 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 ABCD1P33897 745 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 SPAG1Q07617 926 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 MAPK7Q13164 816 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 ZBTB6Q15916 424 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 MGAT5BQ3V5L5 792 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 STXBP5Q5T5C0 1151 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 GAREM2Q75VX8 874 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 METTL23Q86XA0 190 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 CCDC83Q8IWF9 413 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 THEM5Q8N1Q8 247 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 ATAD1Q8NBU5 361 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 C2orf15Q8WU43 125 aaKnown RBP13.3□□□□□ -0.28
SNHG1-216ENST00000541416 ZFYVE19Q96K21 471 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 SEPT5Q99719 369 aaPredicted RBP13.3□□□□□ -0.28
SNHG1-216ENST00000541416 ARRDC1-AS1Q9H2J1 176 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 GREB1Q4ZG55 1949 aa13.3□□□□□ -0.28
SNHG1-216ENST00000541416 OGTO15294 1046 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 EPN2O95208 641 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 AVPR1AP37288 418 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 LILRA4P59901 499 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 RAD51AP2Q09MP3 1159 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 BFSP1Q12934 665 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 CC2D1AQ6P1N0 951 aaPredicted RBP13.29□□□□□ -0.28
SNHG1-216ENST00000541416 GPIHBP1Q8IV16 184 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 CAMKK1Q8N5S9 505 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 SYT2Q8N9I0 419 aaPredicted RBP13.29□□□□□ -0.28
SNHG1-216ENST00000541416 ZSCAN31Q96LW9 406 aaPredicted RBP13.29□□□□□ -0.28
SNHG1-216ENST00000541416 CRISPLD1Q9H336 500 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 KIF3AQ9Y496 699 aa13.29□□□□□ -0.28
SNHG1-216ENST00000541416 MAP1BP46821 2468 aaKnown RBP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 PP2D1A8MPX8 630 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 LACTBL1A8MY62 500 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 MEFVO15553 781 aaPredicted RBP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 VNN2O95498 520 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 DDX6P26196 483 aaKnown RBP eCLIP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 U2AF2P26368 475 aaKnown RBP eCLIP13.28□□□□□ -0.281e-14■□□□□ 10.6
SNHG1-216ENST00000541416 RAP1GAPP47736 663 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SHC2P98077 582 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 RUNX3Q13761 415 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 NBR1Q14596 966 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 KARSQ15046 597 aaKnown RBP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SF3A2Q15428 464 aaKnown RBP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 ELF2Q15723 593 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 FBXO43Q4G163 708 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SLC39A12Q504Y0 691 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 STPG1Q5TH74 334 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SPATA1Q5VX52 437 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 CCDC26Q8TAB7 109 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SPPL2BQ8TCT7 592 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 FAM212AQ96EL1 285 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SENP8Q96LD8 212 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 MKNK1Q9BUB5 465 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 MSTO1Q9BUK6 570 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 KIF9Q9HAQ2 790 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 SH2B1Q9NRF2 756 aaPredicted RBP13.28□□□□□ -0.28
SNHG1-216ENST00000541416 VPS45Q9NRW7 570 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 GKN1Q9NS71 199 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 ODF2LQ9ULJ1 636 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 DERAQ9Y315 318 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 PCDHB6Q9Y5E3 794 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 CHD8Q9HCK8 2581 aa13.28□□□□□ -0.28
SNHG1-216ENST00000541416 ZFHX4Q86UP3 3567 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 SOBPA7XYQ1 873 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 PRAMEF12O95522 483 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 CYP11A1P05108 521 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 DRD1P21728 446 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 PMLP29590 882 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 CDC25AP30304 524 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 NCKAP1LP55160 1127 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 CYP4F8P98187 520 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 CACNB1Q02641 598 aaPredicted RBP13.27□□□□□ -0.29
SNHG1-216ENST00000541416 TNK2Q07912 1038 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 TMEM132DQ14C87 1099 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 TMEM196Q5HYL7 178 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 HYIQ5T013 277 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 N4BP2L1Q5TBK1 243 aaPredicted RBP13.27□□□□□ -0.29
SNHG1-216ENST00000541416 CMTM8Q8IZV2 173 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 KCNN1Q92952 543 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 ZC3H10Q96K80 434 aaKnown RBP13.27□□□□□ -0.29
SNHG1-216ENST00000541416 LRRC3BQ96PB8 259 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 SPAG17Q6Q759 2223 aa13.27□□□□□ -0.29
SNHG1-216ENST00000541416 TRDMT1O14717 391 aaKnown RBP13.26□□□□□ -0.29
SNHG1-216ENST00000541416 EXTL3O43909 919 aa13.26□□□□□ -0.29
SNHG1-216ENST00000541416 SOAT2O75908 522 aa13.26□□□□□ -0.29
SNHG1-216ENST00000541416 RHOBTB1O94844 696 aa13.26□□□□□ -0.29
SNHG1-216ENST00000541416 PLA2G4BP0C869 781 aa13.26□□□□□ -0.29
SNHG1-216ENST00000541416 MPLP40238 635 aa13.26□□□□□ -0.29
SNHG1-216ENST00000541416 TNFSF9P41273 254 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms