RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	NLRP4	Q96MN2	994 aa		13.26	□□□□□ -0.29
RNF4-222	ENST00000541204	PDGFC	Q9NRA1	345 aa		13.26	□□□□□ -0.29
RNF4-222	ENST00000541204	RBPJL	Q9UBG7	517 aa		13.26	□□□□□ -0.29
RNF4-222	ENST00000541204	LCT	P09848	1927 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	IGKV6D-21	A0A0A0MT36	114 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204		A0A0B4J269	797 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	CYP2C8	P10632	490 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	RALA	P11233	206 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	CD58	P19256	250 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	EDNRB	P24530	442 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	STX2	P32856	288 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	COPS2	P61201	443 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	IGBP1	P78318	339 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	BNIP1	Q12981	228 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ZNF268	Q14587	947 aa	Predicted RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	TMEM132A	Q24JP5	1023 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	EAPP	Q56P03	285 aa	Predicted RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ERO1B	Q86YB8	467 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	RHPN2	Q8IUC4	686 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ATL2	Q8NHH9	583 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	GRK7	Q8WTQ7	553 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	PRCC	Q92733	491 aa	Predicted RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	DDX27	Q96GQ7	796 aa	Known RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	C9orf72	Q96LT7	481 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	RMDN2	Q96LZ7	410 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	SPATA33	Q96N06	139 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ZNF408	Q9H9D4	720 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	KIAA1586	Q9HCI6	787 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	NAALADL1	Q9UQQ1	740 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ARL2BP	Q9Y2Y0	163 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	WDR81	Q562E7	1941 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	CENPF	P49454	3210 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ADCY3	O60266	1144 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	GJB6	O95452	261 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	RIPK1	Q13546	671 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	KCTD2	Q14681	263 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	TARBP2	Q15633	366 aa	Known RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	C9orf131	Q5VYM1	1079 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	CGB2	Q6NT52	195 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	ANKRD13A	Q8IZ07	590 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	TMEM130	Q8N3G9	435 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	AGAP11	Q8TF27	550 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	KLHL29	Q96CT2	875 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	C11orf70	Q9BRQ4	267 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	TRIM33	Q9UPN9	1127 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204	NUB1	Q9Y5A7	615 aa		13.25	□□□□□ -0.29
RNF4-222	ENST00000541204		A8MUI8	341 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	CST3	P01034	146 aa	Predicted RBP	13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	KRT16	P08779	473 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MAN1A1	P33908	653 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	GJC1	P36383	396 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	SLFN12L	Q6IEE8	588 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	TLDC1	Q6P9B6	456 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MAIP1	Q8WWC4	291 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MMP19	Q99542	508 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	STK38L	Q9Y2H1	464 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	ARID2	Q68CP9	1835 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	SOCS7	O14512	581 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	RFC5	P40937	340 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	NSF	P46459	744 aa	Known RBP	13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	NOP14	P78316	857 aa	Known RBP	13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MGAT5	Q09328	741 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	LAMTOR4	Q0VGL1	99 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MYO1E	Q12965	1108 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	CUL2	Q13617	745 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	NCOA4	Q13772	614 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	THNSL1	Q8IYQ7	743 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	FGD4	Q96M96	766 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	GPR20	Q99678	358 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MTMR12	Q9C0I1	747 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	PRKAG3	Q9UGI9	489 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	PCDHB2	Q9Y5E7	798 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	STYXL1	Q9Y6J8	313 aa		13.24	□□□□□ -0.29
RNF4-222	ENST00000541204	MAF	O75444	373 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	GBP2	P32456	591 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	SSR1	P43307	286 aa	Known RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	MCCD1	P59942	119 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	CAV1	Q03135	178 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	KLF1	Q13351	362 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	IZUMO3	Q5VZ72	239 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	SCARA5	Q6ZMJ2	495 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	ARHGEF18	Q6ZSZ5	1173 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	ZNF365	Q70YC5	407 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	KIRREL3	Q8IZU9	778 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	GBP7	Q8N8V2	638 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	RXFP1	Q9HBX9	757 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	AGTPBP1	Q9UPW5	1226 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	NEU2	Q9Y3R4	380 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	CNTNAP2	Q9UHC6	1331 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	INO80B-WBP1	J3KQ70	363 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	B4GALT5	O43286	388 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	CDH16	O75309	829 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	TCEA3	O75764	348 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	ANP32D	O95626	131 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	TXN	P10599	105 aa	Known RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	YBX3	P16989	372 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	GNA15	P30679	374 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	SLC1A1	P43005	524 aa		13.23	□□□□□ -0.29

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