RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PPEF2O14830 753 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 KPNA1P52294 538 aaPredicted RBP14.72□□□□□ -0.05
SS18-204ENST00000539244 SPEM2Q0P670 501 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 CCINQ13939 588 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 C9orf57Q5W0N0 161 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 TXNDC11Q6PKC3 985 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 LONP2Q86WA8 852 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 SYNPOQ8N3V7 929 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 NETO1Q8TDF5 533 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 TMEM209Q96SK2 561 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 FIZ1Q96SL8 496 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 PARVGQ9HBI0 331 aa14.72□□□□□ -0.05
SS18-204ENST00000539244 DENND4CQ5VZ89 1909 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 CHURC1-FNTBB4DL54 471 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 K7ENM7 598 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 SLC30A4O14863 429 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 HRO43593 1189 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 GABRR2P28476 465 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ABCD1P33897 745 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 SOX9P48436 509 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 FNTBP49356 437 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 TUFMP49411 452 aaKnown RBP14.71□□□□□ -0.05
SS18-204ENST00000539244 GTF2BQ00403 316 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 PLCB2Q00722 1185 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 DMWDQ09019 674 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 SIM2Q14190 667 aaPredicted RBP14.71□□□□□ -0.05
SS18-204ENST00000539244 LPAL2Q16609 132 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ARHGAP15Q53QZ3 475 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 GPR158Q5T848 1215 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 MCTP1Q6DN14 999 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 JADE1Q6IE81 842 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ARMCX5Q6P1M9 558 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 SLC39A4Q6P5W5 647 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 PRR23BQ6ZRT6 265 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 Q6ZS52 159 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 OR10T2Q8NGX3 314 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 LRRC15Q8TF66 581 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 CNTNAP3BQ96NU0 1288 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 MSTO1Q9BUK6 570 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 CNTNAP3Q9BZ76 1288 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ZCWPW1Q9H0M4 648 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ATXN3LQ9H3M9 355 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ASB7Q9H672 318 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 TASP1Q9H6P5 420 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 IL21Q9HBE4 155 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 RBM12Q9NTZ6 932 aaKnown RBP14.71□□□□□ -0.05
SS18-204ENST00000539244 GTSE1Q9NYZ3 720 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 ZMYM5Q9UJ78 669 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 DSEQ9UL01 958 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 C2CD2Q9Y426 696 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.71□□□□□ -0.05
SS18-204ENST00000539244 ACACBO00763 2458 aa14.71□□□□□ -0.05
SS18-204ENST00000539244 EPG5Q9HCE0 2579 aa14.71□□□□□ -0.06
SS18-204ENST00000539244 DCDC2BA2VCK2 349 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 DPYSL4O14531 572 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 TRAK2O60296 914 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 FOXD2O60548 495 aaPredicted RBP14.7□□□□□ -0.06
SS18-204ENST00000539244 SOAT2O75908 522 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 PRAMEF12O95522 483 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 NFICP08651 508 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 ATF6P18850 670 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 CDC25CP30307 473 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 POU5F1Q01860 360 aaKnown RBP14.7□□□□□ -0.06
SS18-204ENST00000539244 SMARCB1Q12824 385 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 TMEM132DQ14C87 1099 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 CSRP2Q16527 193 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 GPBP1Q86WP2 473 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 MYCT1Q8N699 235 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 BPIFB1Q8TDL5 484 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 C2orf15Q8WU43 125 aaKnown RBP14.7□□□□□ -0.06
SS18-204ENST00000539244 ZFYVE19Q96K21 471 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 CCSER1Q9C0I3 900 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 SEMA4GQ9NTN9 838 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 BLOC1S4Q9NUP1 217 aa14.7□□□□□ -0.06
SS18-204ENST00000539244 FAM13AO94988 1023 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 ADRB1P08588 477 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 VEPH1Q14D04 833 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 SLC39A12Q504Y0 691 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 PRR23CQ6ZRP0 262 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 WDR5BQ86VZ2 330 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 GPIHBP1Q8IV16 184 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 FAM200AQ8TCP9 573 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 CALML4Q96GE6 196 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 LPIN3Q9BQK8 851 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 ST6GALNAC4Q9H4F1 302 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 C2orf42Q9NWW7 574 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 STYXL1Q9Y6J8 313 aa14.69□□□□□ -0.06
SS18-204ENST00000539244 GREB1Q4ZG55 1949 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 SPAG17Q6Q759 2223 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 UBA7P41226 1012 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 MCM2P49736 904 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 CYP4F8P98187 520 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 SRSF5Q13243 272 aaKnown RBP14.68□□□□□ -0.06
SS18-204ENST00000539244 PON2Q15165 354 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 ITPRIPL2Q3MIP1 535 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 MGAT5BQ3V5L5 792 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.68□□□□□ -0.06
SS18-204ENST00000539244 SPPL2BQ8TCT7 592 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 FAM212AQ96EL1 285 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 GCNAQ96QF7 691 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms