RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 TRAF3IP3Q9Y228 551 aa16.53■□□□□ 0.24
CPSF1-210ENST00000532935 SNX9Q9Y5X1 595 aa16.53■□□□□ 0.24
CPSF1-210ENST00000532935 PRR33A8MZF0 331 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 GADD45BO75293 160 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-210ENST00000532935 RHOP08100 348 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 LAMP2P13473 410 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 PTPN2P17706 415 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 CASP4P49662 377 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 TWF1Q12792 350 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 DUSP4Q13115 394 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 MTMR3Q13615 1198 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 SLC39A12Q504Y0 691 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 CENPPQ6IPU0 288 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 TRIM67Q6ZTA4 783 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 SMYD4Q8IYR2 804 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-210ENST00000532935 TMEM86AQ8N2M4 240 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 ELMOD1Q8N336 334 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 TOP6BLQ8N6T0 577 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 ATAD1Q8NBU5 361 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 PARD3BQ8TEW8 1205 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 ZNF516Q92618 1163 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 GSDMAQ96QA5 445 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 KCNK12Q9HB15 430 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 AVENQ9NQS1 362 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-210ENST00000532935 HOOK1Q9UJC3 728 aaKnown RBP16.52■□□□□ 0.24
CPSF1-210ENST00000532935 YIPF1Q9Y548 306 aa16.52■□□□□ 0.24
CPSF1-210ENST00000532935 ZFP37Q9Y6Q3 630 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-210ENST00000532935 SMC2O95347 1197 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 CST3P01034 146 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-210ENST00000532935 SIGLEC14Q08ET2 396 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 NFIL3Q16649 462 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 CEP135Q66GS9 1140 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 UBALD2Q8IYN6 164 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 SPATA20Q8TB22 786 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 SPATA18Q8TC71 538 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 ERCC4Q92889 916 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-210ENST00000532935 FGF13Q92913 245 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 ZNF512Q96ME7 567 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-210ENST00000532935 CORO1BQ9BR76 489 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 SMOC2Q9H3U7 446 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 CEP72Q9P209 647 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 IGSF9Q9P2J2 1179 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 HSFX1Q9UBD0 423 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 CDH7Q9ULB5 785 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 FRMD4BQ9Y2L6 1034 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 SLC27A5Q9Y2P5 690 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 MRPS23Q9Y3D9 190 aaKnown RBP16.51■□□□□ 0.23
CPSF1-210ENST00000532935 PCDHA5Q9Y5H7 936 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 PTPRDP23468 1912 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 DENND4CQ5VZ89 1909 aa16.51■□□□□ 0.23
CPSF1-210ENST00000532935 TMEM221A6NGB7 291 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 LRRIQ3A6PVS8 624 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-210ENST00000532935 M0R296 226 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 KINO60870 393 aaKnown RBP16.5■□□□□ 0.23
CPSF1-210ENST00000532935 NR2F2P24468 414 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 ALDH1A3P47895 512 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 CLDN10P78369 228 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 MYL7Q01449 175 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 TSPY1Q01534 308 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 SMARCB1Q12824 385 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 PLD1Q13393 1074 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 TDGQ13569 410 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 SLC5A9Q2M3M2 681 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 SOWAHAQ2M3V2 549 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 ZCWPW2Q504Y3 356 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 IQCEQ6IPM2 695 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 DPH6Q7L8W6 267 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 LRRTM3Q86VH5 581 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 OSTM1Q86WC4 334 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 ELOA2Q8IYF1 753 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-210ENST00000532935 DCP1BQ8IZD4 617 aaKnown RBP16.5■□□□□ 0.23
CPSF1-210ENST00000532935 ADGRF2Q8IZF7 708 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 TTC9BQ8N6N2 239 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 SMARCE1Q969G3 411 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 NXPE3Q969Y0 559 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 ACBD6Q9BR61 282 aa16.5■□□□□ 0.23
CPSF1-210ENST00000532935 DDX43Q9NXZ2 648 aaKnown RBP16.5■□□□□ 0.23
CPSF1-210ENST00000532935 PHACTR2O75167 634 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 RPL13P26373 211 aaKnown RBP16.49■□□□□ 0.23
CPSF1-210ENST00000532935 LHX1P48742 406 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 CDR1P51861 262 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 AP3M2P53677 418 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 EPHB3P54753 998 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 TRPC3Q13507 836 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 PRSS36Q5K4E3 855 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 ZNF658Q5TYW1 1059 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-210ENST00000532935 TDRD10Q5VZ19 366 aaKnown RBP16.49■□□□□ 0.23
CPSF1-210ENST00000532935 HFE2Q6ZVN8 426 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 PDZD4Q76G19 769 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-210ENST00000532935 LIMS2Q7Z4I7 341 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 NPAS3Q8IXF0 933 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 TMC2Q8TDI7 906 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 C2orf15Q8WU43 125 aaKnown RBP16.49■□□□□ 0.23
CPSF1-210ENST00000532935 RSAD2Q8WXG1 361 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 ING5Q8WYH8 240 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 DNAJC25Q9H1X3 360 aa16.49■□□□□ 0.23
CPSF1-210ENST00000532935 ANHXE9PGG2 379 aa16.48■□□□□ 0.23
CPSF1-210ENST00000532935 ZNF197O14709 1029 aa16.48■□□□□ 0.23
CPSF1-210ENST00000532935 GABRDO14764 452 aa16.48■□□□□ 0.23
CPSF1-210ENST00000532935 MAPK13O15264 365 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms