RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ASRGL1Q7L266 308 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 KIF2BQ8N4N8 673 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ALLCQ8N6M5 410 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 CCHCR1Q8TD31 782 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 KLHL29Q96CT2 875 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 PORCNQ9H237 461 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ARHGEF3Q9NR81 526 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 FBXO40Q9UH90 709 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ZNF214Q9UL59 606 aaPredicted RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 ZNF148Q9UQR1 794 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 SRCAPQ6ZRS2 3230 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 A0A0B4J269 797 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 LRRIQ4A6NIV6 560 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 K7ERI5 159 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 ASMTLO95671 621 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 KRT1P04264 644 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 PECAM1P16284 738 aaPredicted RBP20.35■□□□□ 0.85
VPS28-213ENST00000530983 CETN2P41208 172 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 ARSEP51690 589 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 IL9RQ01113 521 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 CCDC142Q17RM4 750 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 SLFN12LQ6IEE8 588 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 PPP1R2P3Q6NXS1 205 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 ECHDC2Q86YB7 292 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 CDHR1Q96JP9 859 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 KLHL14Q9P2G3 628 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 ADGRA2Q96PE1 1338 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 LCTP09848 1927 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 DOCK1Q14185 1865 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 TCRBV5S1A1TA0A578 114 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 SPATA31C2B4DYI2 1134 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 TJP3O95049 919 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 KRT16P08779 473 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 NAMPTP43490 491 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 SP2Q02086 613 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 ACVR2BQ13705 512 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 NCOA4Q13772 614 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 SEZ6Q53EL9 994 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 UBR7Q8N806 425 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 PITPNM3Q9BZ71 974 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 DHX33Q9H6R0 707 aaKnown RBP20.35■□□□□ 0.85
VPS28-213ENST00000530983 CYP39A1Q9NYL5 469 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 KCNG1Q9UIX4 513 aa20.35■□□□□ 0.85
VPS28-213ENST00000530983 F8VP50 259 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 SPAG7O75391 227 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 LDHAP00338 332 aaKnown RBP20.34■□□□□ 0.85
VPS28-213ENST00000530983 KCNA3P22001 575 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 BACE1P56817 501 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 OGDHQ02218 1023 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 GPS1Q13098 491 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 HP1BP3Q5SSJ5 553 aaPredicted RBP20.34■□□□□ 0.85
VPS28-213ENST00000530983 ZFYVE27Q5T4F4 411 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 TXNRD3NBQ6F5E7 133 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 SPOCD1Q6ZMY3 1216 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 FAM47EQ6ZV65 393 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 TDRPQ86YL5 185 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 DEPTORQ8TB45 409 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 DENND1AQ8TEH3 1009 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 GRAMD1AQ96CP6 724 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 MCEEQ96PE7 176 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 KIF9Q9HAQ2 790 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 TRIM33Q9UPN9 1127 aa20.34■□□□□ 0.85
VPS28-213ENST00000530983 A0A1B0GUA9 196 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 HGSO14964 777 aaPredicted RBP20.33■□□□□ 0.85
VPS28-213ENST00000530983 RXRBP28702 533 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 MCL1Q07820 350 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 NR1H3Q13133 447 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 TNFAIP1Q13829 316 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 AGAP11Q8TF27 550 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 TTC25Q96NG3 672 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 PAIP2Q9BPZ3 127 aaKnown RBP20.33■□□□□ 0.85
VPS28-213ENST00000530983 UBN1Q9NPG3 1134 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 L3MBTL1Q9Y468 752 aa20.33■□□□□ 0.85
VPS28-213ENST00000530983 CCNB1P14635 433 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 GBP2P32456 591 aaPredicted RBP20.33■□□□□ 0.84
VPS28-213ENST00000530983 ARL2P36404 184 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 OASLQ15646 514 aaKnown RBP20.33■□□□□ 0.84
VPS28-213ENST00000530983 WDR72Q3MJ13 1102 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 LRRC38Q5VT99 294 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 ACSF2Q96CM8 615 aaPredicted RBP20.33■□□□□ 0.84
VPS28-213ENST00000530983 STAMBPL1Q96FJ0 436 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 EBF2Q9HAK2 575 aa20.33■□□□□ 0.84
VPS28-213ENST00000530983 MAFBQ9Y5Q3 323 aaPredicted RBP20.33■□□□□ 0.84
VPS28-213ENST00000530983 POC1B-GALNT4F8VUJ3 575 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 MAGEB2O15479 319 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 PRPF4O43172 522 aaKnown RBP eCLIP20.32■□□□□ 0.84
VPS28-213ENST00000530983 OATP04181 439 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 CCDC15Q0P6D6 951 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 TMEM132BQ14DG7 1078 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 PKN2Q16513 984 aaKnown RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 RNASEH2BQ5TBB1 312 aaKnown RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 SPOCK2Q92563 424 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 PRCCQ92733 491 aaPredicted RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 DRG1Q9Y295 367 aaKnown RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 hCG_1818297A0A087WSY0 165 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 A8MUI8 341 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 CST3P01034 146 aaPredicted RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 OAZ1P54368 228 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 VCPP55072 806 aaKnown RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 MORF4L2Q15014 288 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms