RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 YIPF1Q9Y548 306 aa22.51■■□□□ 1.19
VPS28-203ENST00000524521 NOTCH4Q99466 2003 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 MTMR11A4FU01 709 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 ANHXE9PGG2 379 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 NARSO43776 548 aaKnown RBP22.5■■□□□ 1.19
VPS28-203ENST00000524521 EXOC3O60645 756 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 PDGFBP01127 241 aaPredicted RBP22.5■■□□□ 1.19
VPS28-203ENST00000524521 CYP24A1Q07973 514 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 DPYDQ12882 1025 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 HTR4Q13639 388 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 PSMD6Q15008 389 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 SLC5A9Q2M3M2 681 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 CYP4A22Q5TCH4 519 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 WDR49Q8IV35 697 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 HS6ST3Q8IZP7 471 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 MCRS1Q96EZ8 462 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 ZCWPW1Q9H0M4 648 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 AVENQ9NQS1 362 aaPredicted RBP22.5■■□□□ 1.19
VPS28-203ENST00000524521 DUSP12Q9UNI6 340 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 SNX9Q9Y5X1 595 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 NUMBLQ9Y6R0 609 aa22.5■■□□□ 1.19
VPS28-203ENST00000524521 ZNF197O14709 1029 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 ALDH1A3P47895 512 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 MYO1EQ12965 1108 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 PARM1Q6UWI2 310 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 PDZD4Q76G19 769 aaPredicted RBP22.49■■□□□ 1.19
VPS28-203ENST00000524521 NPAS3Q8IXF0 933 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 PDCL2Q8N4E4 241 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 TCEAL4Q96EI5 215 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 GDAP2Q9NXN4 497 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 FBXL21Q9UKT6 434 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 L1RE1Q9UN81 338 aa22.49■■□□□ 1.19
VPS28-203ENST00000524521 RHOBTB3O94955 611 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 MYL4P12829 197 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 EPHB3P54753 998 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 PLD1Q13393 1074 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 TRAPPC11Q7Z392 1133 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 LRRTM3Q86VH5 581 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 TTC9BQ8N6N2 239 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 FGF14Q92915 247 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 CCDC34Q96HJ3 373 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 HPDLQ96IR7 371 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 CGRRF1Q99675 332 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 RPP25Q9BUL9 199 aaKnown RBP22.48■■□□□ 1.19
VPS28-203ENST00000524521 KCTD10Q9H3F6 313 aa22.48■■□□□ 1.19
VPS28-203ENST00000524521 TSC2P49815 1807 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 PDXKO00764 312 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 PRPF40AO75400 957 aaKnown RBP22.47■■□□□ 1.19
VPS28-203ENST00000524521 SOAT2O75908 522 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 CEBPBP17676 345 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 PRSS36Q5K4E3 855 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 MTSS1LQ765P7 747 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 DCP1BQ8IZD4 617 aaKnown RBP22.47■■□□□ 1.19
VPS28-203ENST00000524521 TMEM86AQ8N2M4 240 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 MFSD1Q9H3U5 465 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 ASAH2Q9NR71 780 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 GDE1Q9NZC3 331 aa22.47■■□□□ 1.19
VPS28-203ENST00000524521 TRIOO75962 3097 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 KIF20AO95235 890 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 CST3P01034 146 aaPredicted RBP22.46■■□□□ 1.19
VPS28-203ENST00000524521 CFHP08603 1231 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 CCR2P41597 374 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 TUFMP49411 452 aaKnown RBP22.46■■□□□ 1.19
VPS28-203ENST00000524521 TSPY1Q01534 308 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 SMARCB1Q12824 385 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 FMR1NBQ8N0W7 255 aaPredicted RBP22.46■■□□□ 1.19
VPS28-203ENST00000524521 TOP6BLQ8N6T0 577 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 ZNF516Q92618 1163 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 SEPT5Q99719 369 aaPredicted RBP22.46■■□□□ 1.19
VPS28-203ENST00000524521 DMAC2Q9NW81 257 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 DDX43Q9NXZ2 648 aaKnown RBP22.46■■□□□ 1.19
VPS28-203ENST00000524521 HSFX1Q9UBD0 423 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 MAPK8IP1Q9UQF2 711 aa22.46■■□□□ 1.19
VPS28-203ENST00000524521 SRFP11831 508 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 MYL7Q01449 175 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 SOWAHAQ2M3V2 549 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 MGAT5BQ3V5L5 792 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 SLC9A9Q8IVB4 645 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 ADGRF2Q8IZF7 708 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 LEMD2Q8NC56 503 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 KXD1Q9BQD3 176 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 ACBD6Q9BR61 282 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 DNAJC25Q9H1X3 360 aa22.45■■□□□ 1.18
VPS28-203ENST00000524521 ABI2Q9NYB9 513 aaPredicted RBP22.45■■□□□ 1.18
VPS28-203ENST00000524521 CALUO43852 315 aaPredicted RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 MICAL2O94851 1124 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 NR3C1P04150 777 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 GJA1P17302 382 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 ACAT1P24752 427 aaKnown RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 AVPR2P30518 371 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 LHX1P48742 406 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 CASP4P49662 377 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 EPHA5P54756 1037 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 PNOCQ13519 176 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 KCNB1Q14721 858 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 POTEHQ6S545 545 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 DPH6Q7L8W6 267 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 DNAJB7Q7Z6W7 309 aaPredicted RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 OSTM1Q86WC4 334 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 FAM200AQ8TCP9 573 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms