RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	DSTYK	Q6XUX3	929 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	SV2A	Q7L0J3	742 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ZC3H18	Q86VM9	953 aa	Known RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	MAP4K3	Q8IVH8	894 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ATP11C	Q8NB49	1132 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	MFSD14A	Q96MC6	490 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	MRI	Q9BWK5	157 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	TRIM4	Q9C037	500 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	MANSC1	Q9H8J5	431 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	PDP2	Q9P2J9	529 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	DCTN4	Q9UJW0	460 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	DNPEP	Q9ULA0	475 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141		A0A0G2JND7	137 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ATP9A	O75110	1047 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	UPP2	O95045	317 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	SERPINB2	P05120	415 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	FGFR1	P11362	822 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	KCNA3	P22001	575 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ADRA1D	P25100	572 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	SSR1	P43307	286 aa	Known RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ZBTB16	Q05516	673 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	PDIA2	Q13087	525 aa	Known RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	HIF1A	Q16665	826 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	FAM98C	Q17RN3	349 aa	Known RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	NBPF20	Q3BBV1	942 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	PLEKHG4	Q58EX7	1191 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	ACSBG2	Q5FVE4	666 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	SESTD1	Q86VW0	696 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	FBXL18	Q96ME1	805 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	TSSK1B	Q9BXA7	367 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	PCDH9	Q9HC56	1237 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	HEY2	Q9UBP5	337 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	TBX20	Q9UMR3	447 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	RGPD4	Q7Z3J3	1758 aa		10.82	□□□□□ -0.68
SPIDR-225	ENST00000524141	CFAP69	A5D8W1	941 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	DDX39A	O00148	427 aa	Known RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	AP1G2	O75843	785 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	GH2	P01242	217 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	GJC1	P36383	396 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ARFIP2	P53365	341 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	CDK16	Q00536	496 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	CYP24A1	Q07973	514 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ADGRD1	Q6QNK2	874 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	PTF1A	Q7RTS3	328 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	SCYL3	Q8IZE3	742 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	UCMA	Q8WVF2	138 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	FGD4	Q96M96	766 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	NR1H4	Q96RI1	486 aa	Predicted RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ZNF184	Q99676	751 aa	Predicted RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	CCDC28B	Q9BUN5	200 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	FAM198A	Q9UFP1	575 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	IP6K2	Q9UHH9	426 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	LY75	O60449	1722 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141		G3V3G9	751 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	KRT36	O76013	467 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ITGAV	P06756	1048 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ESRRA	P11474	423 aa	Predicted RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	YWHAB	P31946	246 aa	Known RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	VCP	P55072	806 aa	Known RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	MAMLD1	Q13495	774 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	WDR44	Q5JSH3	913 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	DCAF8	Q5TAQ9	597 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	LRRC38	Q5VT99	294 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	DAB2IP	Q5VWQ8	1189 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	FAM91A1	Q658Y4	838 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	PLEKHA7	Q6IQ23	1121 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	CAPN12	Q6ZSI9	719 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	NIPA1	Q7RTP0	329 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	CHSY1	Q86X52	802 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	RFWD2	Q8NHY2	731 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	NKD2	Q969F2	451 aa	Predicted RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	SKA1	Q96BD8	255 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	BICD1	Q96G01	975 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	SLITRK1	Q96PX8	696 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	SENP7	Q9BQF6	1050 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	TOPORS	Q9NS56	1045 aa	Predicted RBP	10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	PARVA	Q9NVD7	372 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ARL8B	Q9NVJ2	186 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	RABGEF1	Q9UJ41	708 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	ANGPTL2	Q9UKU9	493 aa		10.81	□□□□□ -0.68
SPIDR-225	ENST00000524141	IL1B	P01584	269 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	ATF7	P17544	494 aa	Predicted RBP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	PTPN7	P35236	360 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	RPS6KA3	P51812	740 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	CACNB3	P54284	484 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	C1QBP	Q07021	282 aa	Known RBP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	DMP1	Q13316	513 aa	Predicted RBP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	DYNC1I2	Q13409	638 aa	Known RBP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	ZFYVE27	Q5T4F4	411 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	RNF220	Q5VTB9	566 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	SH3BP5L	Q7L8J4	393 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	PHF13	Q86YI8	300 aa	Predicted RBP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	ARHGAP18	Q8N392	663 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	BANP	Q8N9N5	519 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	GLIS1	Q8NBF1	620 aa		10.8	□□□□□ -0.68
SPIDR-225	ENST00000524141	TCP10L	Q8TDR4	215 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms