RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 TMEM120AQ9BXJ8 343 aa10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 CEP44Q9C0F1 390 aa10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 KIAA1586Q9HCI6 787 aa10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 C6orf203Q9P0P8 240 aaPredicted RBP10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 SRP68Q9UHB9 627 aaKnown RBP10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 ASB3Q9Y575 518 aa10.63□□□□□ -0.71
PDGFRB-207ENST00000520579 ATP9BO43861 1147 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 NR1H3Q13133 447 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TRIP10Q15642 601 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 RABGAP1LQ5R372 815 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TRMT10CQ7L0Y3 403 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 SLFN11Q7Z7L1 901 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GFM2Q969S9 779 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 FAM111AQ96PZ2 611 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PCDHB18PQ96TA0 734 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PI4K2AQ9BTU6 479 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 MECRQ9BV79 373 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GRIP2Q9C0E4 1043 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TMEM117Q9H0C3 514 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 SH3GLB2Q9NR46 395 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 CNOT7Q9UIV1 285 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PPM1HQ9ULR3 514 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GMEB1Q9Y692 573 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 DISP2A7MBM2 1401 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 ATRNO75882 1429 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 UBAP1LF5GYI3 381 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PIK3R2O00459 728 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 FOXD2O60548 495 aaPredicted RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 CCDC22O60826 627 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 ALCAMQ13740 583 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PSMD6Q15008 389 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 CYTH1Q15438 398 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 BTNL9Q6UXG8 535 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GSTCDQ8NEC7 633 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 NSL1Q96IY1 281 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GCNAQ96QF7 691 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 FHDC1Q9C0D6 1143 aaPredicted RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 KRT82Q9NSB4 513 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TMOD2Q9NZR1 351 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 FAF1Q9UNN5 650 aaPredicted RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TRAF3IP3Q9Y228 551 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PENKP01210 267 aaPredicted RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 APOEP02649 317 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TRIM28Q13263 835 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 LBRQ14739 615 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 ODR4Q5SWX8 454 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 C12orf60Q5U649 245 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PPP1R2P3Q6NXS1 205 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 RAPH1Q70E73 1250 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 GALNT4Q8N4A0 578 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 PPP1R14CQ8TAE6 165 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TCP10LQ8TDR4 215 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 CATSPER2Q96P56 530 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 MAK16Q9BXY0 300 aaKnown RBP10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TRIM55Q9BYV6 548 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 IRF2BPLQ9H1B7 796 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 TAS2R1Q9NYW7 299 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 MINPP1Q9UNW1 487 aa10.62□□□□□ -0.71
PDGFRB-207ENST00000520579 MYCP01106 439 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 PSMC2P35998 433 aaKnown RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 NCOA4Q13772 614 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 GIT2Q14161 759 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ZCCHC23Q6ZST2 131 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 CROCCP2Q86T23 111 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 RSPH3Q86UC2 560 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 APLFQ8IW19 511 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 GABPB2Q8TAK5 448 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 LRRN4Q8WUT4 740 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 PTPRN2Q92932 1015 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 BTBD10Q9BSF8 475 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 MIS12Q9H081 205 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ATP8A2Q9NTI2 1148 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 LZTS1Q9Y250 596 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 PDLIM1O00151 329 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 SORBS3O60504 671 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 HOXD13P35453 343 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 NRLP54845 237 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 SLC25A3Q00325 362 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 MMEL1Q495T6 779 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 LIN52Q52LA3 116 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 TCHHL1Q5QJ38 904 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 WASHC2DQ5SRD0 308 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 RIPOR1Q6ZS17 1223 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 FAM178BQ8IXR5 827 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 MTBPQ96DY7 904 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 TRAPPC9Q96Q05 1148 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 NMUR2Q9GZQ4 415 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ASCC2Q9H1I8 757 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 TOPAZ1Q8N9V7 1692 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ERVV-2B6SEH9 535 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 SGK1O00141 431 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 FCHO1O14526 889 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 EDF1O60869 148 aaKnown RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 HSPA1AP0DMV8 641 aaKnown RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 HSPA1BP0DMV9 641 aaKnown RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ASPHQ12797 758 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 LRRC8BQ6P9F7 803 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 ARID3BQ8IVW6 561 aaPredicted RBP10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 RNF148Q8N7C7 305 aa10.61□□□□□ -0.71
PDGFRB-207ENST00000520579 EIF1ADQ8N9N8 165 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms