RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CCDC150Q8NCX0 1101 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 SLC17A8Q8NDX2 589 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 ZFP28Q8NHY6 868 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 TFAP2CQ92754 450 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 SPSB4Q96A44 273 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 ZNF512Q96ME7 567 aaPredicted RBP8.75□□□□□ -1.01
LSM1-202ENST00000520286 MS4A7Q9GZW8 240 aaPredicted RBP8.75□□□□□ -1.01
LSM1-202ENST00000520286 SIK2Q9H0K1 926 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 RGS17Q9UGC6 210 aaPredicted RBP8.75□□□□□ -1.01
LSM1-202ENST00000520286 MID2Q9UJV3 735 aa8.75□□□□□ -1.01
LSM1-202ENST00000520286 SYT5O00445 386 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 MAPK9P45984 424 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 ITGA8P53708 1063 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 PRKG1Q13976 671 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 SPARCL1Q14515 664 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 DOK3Q7L591 496 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 ANKRD18AQ8IVF6 992 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 GPR135Q8IZ08 494 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 LINC01356Q8N9X3 169 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 GLIS1Q8NBF1 620 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 FAM46DQ8NEK8 389 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 TBC1D15Q8TC07 691 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 NEIL1Q96FI4 390 aaPredicted RBP8.74□□□□□ -1.01
LSM1-202ENST00000520286 FAM84AQ96KN4 292 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 KLHL32Q96NJ5 620 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 DPYSL5Q9BPU6 564 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 LSM14BQ9BX40 385 aaKnown RBP8.74□□□□□ -1.01
LSM1-202ENST00000520286 IMPG2Q9BZV3 1241 aa8.74□□□□□ -1.01
LSM1-202ENST00000520286 B4GALT3O60512 393 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 CNOT4O95628 575 aaKnown RBP8.73□□□□□ -1.01
LSM1-202ENST00000520286 KRT1P04264 644 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 DHRS4L1P0CG22 281 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 VEGFAP15692 232 aaPredicted RBP8.73□□□□□ -1.01
LSM1-202ENST00000520286 SLC6A2P23975 617 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 SERPINF1P36955 418 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 KIAA2012Q0VF49 1180 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 RAB30Q15771 203 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 VMACQ2NL98 169 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 FAM160B1Q5W0V3 765 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 FAM83AQ86UY5 434 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 TP53I13Q8NBR0 393 aaPredicted RBP8.73□□□□□ -1.01
LSM1-202ENST00000520286 RNF169Q8NCN4 708 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 IPO4Q8TEX9 1081 aaKnown RBP8.73□□□□□ -1.01
LSM1-202ENST00000520286 SPATA5L1Q9BVQ7 753 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 ZNF69Q9UC07 566 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 OAZ3Q9UMX2 235 aa8.73□□□□□ -1.01
LSM1-202ENST00000520286 RIMBP3CA6NJZ7 1639 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 RIMBP3BA6NNM3 1639 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 RIMBP3Q9UFD9 1639 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 ARHGEF11O15085 1522 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 PRR5-ARHGAP8B1AHC4 643 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 E9PLN8 166 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 ACKR2O00590 384 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 CDC14BO60729 498 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 KIF20AO95235 890 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 A1BGP04217 495 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 CR2P20023 1033 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 GABRB3P28472 473 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 PTTG1IPP53801 180 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 SLC29A2Q14542 456 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 POSTNQ15063 836 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 FKBP15Q5T1M5 1219 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 EFCAB12Q6NXP0 572 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 TEX19Q8NA77 164 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 DNERQ8NFT8 737 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 RAPGEF4Q8WZA2 1011 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 VKORC1Q9BQB6 163 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 CPPED1Q9BRF8 314 aaPredicted RBP8.72□□□□□ -1.01
LSM1-202ENST00000520286 SORBS1Q9BX66 1292 aaKnown RBP8.72□□□□□ -1.01
LSM1-202ENST00000520286 SPON1Q9HCB6 807 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 MSL2Q9HCI7 577 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 CD320Q9NPF0 282 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 NECTIN3Q9NQS3 549 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 RGL1Q9NZL6 768 aa8.72□□□□□ -1.01
LSM1-202ENST00000520286 AQP12BA6NM10 295 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 TRIM38O00635 465 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 ITGB1P05556 798 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 C1QTNF9P0C862 333 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 BTF3P20290 206 aaKnown RBP8.71□□□□□ -1.02
LSM1-202ENST00000520286 COPAP53621 1224 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 FOXO1Q12778 655 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 PTK2BQ14289 1009 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 LVRNQ6Q4G3 990 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 ZDHHC24Q6UX98 284 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 GPRIN1Q7Z2K8 1008 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 PDPRQ8NCN5 879 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 FAM71BQ8TC56 605 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 SNX27Q96L92 541 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 CNPPD1Q9BV87 410 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.71□□□□□ -1.02
LSM1-202ENST00000520286 NELFAQ9H3P2 528 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 ITM2CQ9NQX7 267 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 USP40Q9NVE5 1235 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 RRN3Q9NYV6 651 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 IGSF9Q9P2J2 1179 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 PGAP2Q9UHJ9 254 aa8.71□□□□□ -1.02
LSM1-202ENST00000520286 A0A087WZ62 844 aa8.7□□□□□ -1.02
LSM1-202ENST00000520286 RAB27BO00194 218 aa8.7□□□□□ -1.02
LSM1-202ENST00000520286 INMTO95050 263 aa8.7□□□□□ -1.02
LSM1-202ENST00000520286 IDEP14735 1019 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms