RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 KIF13BQ9NQT8 1826 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 UBE2QL1A1L167 161 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 NPEPPSL1A6NEC2 478 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 FAM171A2A8MVW0 826 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 ITGA10O75578 1167 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 SCGB1D2O95969 90 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 HMGB1P09429 215 aaKnown RBP8.46□□□□□ -1.06
SDCBP-208ENST00000520228 RPS19P39019 145 aaKnown RBP8.46□□□□□ -1.06
SDCBP-208ENST00000520228 DUSP2Q05923 314 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 PPP2R5AQ15172 486 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 BEND3Q5T5X7 828 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 SLC4A10Q6U841 1118 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 UBE3BQ7Z3V4 1068 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 LIMS2Q7Z4I7 341 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 OR7D4Q8NG98 312 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 CSRNP2Q9H175 543 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 INTUQ9ULD6 942 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 ATP6V0A2Q9Y487 856 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 ABCC4O15439 1325 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 PTPRCP08575 1304 aa8.46□□□□□ -1.06
SDCBP-208ENST00000520228 TSPAN6O43657 245 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 PARNO95453 639 aaKnown RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 IL33O95760 270 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 ITGB3P05106 788 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 VCAM1P19320 739 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 AKAP5P24588 427 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 ECHS1P30084 290 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 SREBF1P36956 1147 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 CASRP41180 1078 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 PRELPP51888 382 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 RARSP54136 660 aaKnown RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 GRAPQ13588 217 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 C3orf36Q3SXR2 165 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 CCDC152Q4G0S7 254 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 RRP12Q5JTH9 1297 aaKnown RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 TCTN3Q6NUS6 607 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 MIER2Q8N344 545 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 GRAPLQ8TC17 118 aaPredicted RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 TCEAL9Q9UHQ7 104 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 SAP30BPQ9UHR5 308 aaKnown RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 SLC30A1Q9Y6M5 507 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 ZBED9Q6R2W3 1325 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 CDHR2Q9BYE9 1310 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 KIAA1551Q9HCM1 1747 aa8.45□□□□□ -1.06
SDCBP-208ENST00000520228 N4BP2Q86UW6 1770 aaPredicted RBP8.45□□□□□ -1.06
SDCBP-208ENST00000520228 A0A1W2PRX2 142 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 CCDC154A6NI56 674 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 ADCY6O43306 1168 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 FOXS1O43638 330 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 RAD17O75943 681 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 ENDOD1O94919 500 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 POU2F2P09086 479 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 CTSWP56202 376 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 RPS8P62241 208 aaKnown RBP8.44□□□□□ -1.06
SDCBP-208ENST00000520228 CHPFQ8IZ52 775 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 PRR18Q8N4B5 295 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 DNERQ8NFT8 737 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 PSMD1Q99460 953 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 C9orf78Q9NZ63 289 aaPredicted RBP8.44□□□□□ -1.06
SDCBP-208ENST00000520228 RCAN3Q9UKA8 241 aa8.44□□□□□ -1.06
SDCBP-208ENST00000520228 AFDNP55196 1824 aaKnown RBP8.44□□□□□ -1.06
SDCBP-208ENST00000520228 PATE3B3GLJ2 98 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 GRM8O00222 908 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 MRPL49Q13405 166 aaKnown RBP8.43□□□□□ -1.06
SDCBP-208ENST00000520228 UAP1L1Q3KQV9 507 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 FAM102BQ5T8I3 360 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 NXNQ6DKJ4 435 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 CIR1Q86X95 450 aaPredicted RBP8.43□□□□□ -1.06
SDCBP-208ENST00000520228 TPH2Q8IWU9 490 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 FUKQ8N0W3 1084 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 CELF1Q92879 486 aaKnown RBP8.43□□□□□ -1.06
SDCBP-208ENST00000520228 BORCS6Q96GS4 357 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 TCF25Q9BQ70 676 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 PLA2G3Q9NZ20 509 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 NCDNQ9UBB6 729 aa8.43□□□□□ -1.06
SDCBP-208ENST00000520228 NOB1Q9ULX3 412 aaKnown RBP8.43□□□□□ -1.06
SDCBP-208ENST00000520228 WNT10BO00744 389 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 PRPF3O43395 683 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 PDCP20941 246 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 CYP2C19P33261 490 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 GUCY1A2P33402 732 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 GZMKP49863 264 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 NPEPPSP55786 919 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 GRM7Q14831 915 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 PRAMEF14Q5SWL7 426 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 CXorf57Q6NSI4 855 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 FAM111BQ6SJ93 734 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 GLB1LQ6UWU2 654 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 ANKRD18AQ8IVF6 992 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 TCEAL8Q8IYN2 117 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 PQLC1Q8N2U9 271 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 GIMAP8Q8ND71 665 aaPredicted RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 SUPT20HQ8NEM7 779 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 OR5M3Q8NGP4 307 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 CXorf38Q8TB03 319 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 HDAC10Q969S8 669 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 AIFM3Q96NN9 605 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 OR14A2Q96R54 314 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 CDC5LQ99459 802 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 C7orf25Q9BPX7 421 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms