RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 C10orf88Q9H8K7 445 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 ABCF3Q9NUQ8 709 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 PCMTD2Q9NV79 361 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 GAKO14976 1311 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CASQ2O14958 399 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 MAP3K7O43318 606 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 PIAS1O75925 651 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 RARAP10276 462 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 PMLP29590 882 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 C1orf186Q6ZWK4 172 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 HPDLQ96IR7 371 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 SMARCAD1Q9H4L7 1026 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 SLC40A1Q9NP59 571 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 KCNMB3Q9NPA1 279 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 PXMP2Q9NR77 195 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 STAP1Q9ULZ2 295 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 GZMAP12544 262 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 RPL21P46778 160 aaKnown RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 RBP5P82980 135 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CYP24A1Q07973 514 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 ARSHQ5FYA8 562 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 KIAA1841Q6NSI8 718 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 IL31RAQ8NI17 732 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CERKQ8TCT0 537 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CLMNQ96JQ2 1002 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 FSD1LQ9BXM9 530 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 LOC100653049A0A140TA62 436 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 SLC26A4O43511 780 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 KRT34O76011 436 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 HOXA10P31260 410 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 CTCFP49711 727 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 ATXN3P54252 364 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 AGBL3Q8NEM8 1001 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 RBM46Q8TBY0 533 aaKnown RBP12.28□□□□□ -0.44
SYNPO-204ENST00000519664 PARD3BQ8TEW8 1205 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 GTSE1Q9NYZ3 720 aa12.28□□□□□ -0.44
SYNPO-204ENST00000519664 SYF2O95926 243 aaKnown RBP12.27□□□□□ -0.44
SYNPO-204ENST00000519664 RARGP13631 454 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 AMPD2Q01433 879 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 ZNF844Q08AG5 666 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 PTK7Q13308 1070 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 PGM5Q15124 567 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 DCAF6Q58WW2 860 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 TRIM67Q6ZTA4 783 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 GPRASP2Q96D09 838 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 TSSK1BQ9BXA7 367 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 C3P01024 1663 aa12.27□□□□□ -0.44
SYNPO-204ENST00000519664 IGF2BP3O00425 579 aaKnown RBP eCLIP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 NPTXRO95502 500 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 SPATA31C1P0DKV0 1188 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 AP3M2P53677 418 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 CDH8P55286 799 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PTENP60484 403 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 COPS2P61201 443 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 IL1RL1Q01638 556 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 EFHC2Q5JST6 749 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 ZSWIM2Q8NEG5 633 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 IDI2Q9BXS1 227 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 SALL4Q9UJQ4 1053 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PIK3C2AO00443 1686 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 GTPBP10A4D1E9 387 aaKnown RBP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 FBXO16Q8IX29 292 aaPredicted RBP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 C4orf19Q8IY42 314 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PPP1R13LQ8WUF5 828 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 LRGUKQ96M69 825 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 NT5C1AQ9BXI3 368 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 BCAS3Q9H6U6 928 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 CISHQ9NSE2 258 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PSMC3IPQ9P2W1 217 aaPredicted RBP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 FER1L4A9Z1Z3 1794 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 NEMP1O14524 444 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PJA2O43164 708 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 ATP9AO75110 1047 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 VTNP04004 478 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 VIL1P09327 827 aaKnown RBP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 FGRP09769 529 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 FNTAP49354 379 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 STX1BP61266 288 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 ZNF200P98182 395 aaPredicted RBP12.27□□□□□ -0.45
SYNPO-204ENST00000519664 TMC3Q7Z5M5 1100 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 ACOT1Q86TX2 421 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 CAVIN3Q969G5 261 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 CHST7Q9NS84 486 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 PCDHGC5Q9Y5F6 944 aa12.27□□□□□ -0.45
SYNPO-204ENST00000519664 IFT172Q9UG01 1749 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 TLR2O60603 784 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 OTUD4Q01804 1114 aaKnown RBP12.26□□□□□ -0.45
SYNPO-204ENST00000519664 TAP1Q03518 808 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 TAF1BQ53T94 588 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-204ENST00000519664 IER5Q5VY09 327 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 PRUNE1Q86TP1 453 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 ACTL9Q8TC94 416 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 SLC26A7Q8TE54 656 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 SAE1Q9UBE0 346 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-204ENST00000519664 IPO11Q9UI26 975 aaKnown RBP12.26□□□□□ -0.45
SYNPO-204ENST00000519664 ASTN1O14525 1302 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 ANKRD26Q9UPS8 1709 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 OGTO15294 1046 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 ITGB5P18084 799 aa12.26□□□□□ -0.45
SYNPO-204ENST00000519664 TARSP26639 723 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms