RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 CCDC60Q8IWA6 550 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 SCN4BQ8IWT1 228 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 PPHLN1Q8NEY8 458 aaKnown RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 USP1O94782 785 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 ADORA2BP29275 332 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 GEMIN4P57678 1058 aaKnown RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 SCUBE1Q8IWY4 988 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 ZNRF3Q9ULT6 936 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 E2F8A0AVK6 867 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 C3orf70A6NLC5 250 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 GSG1L2A8MUP6 293 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 SMAPO00193 183 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 ZBTB39O15060 712 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 GRIN3BO60391 1043 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 FDX1P10109 184 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 AKR1B1P15121 316 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PHKA2P46019 1235 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 RECQLP46063 649 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 CACNA2D1P54289 1103 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 OASLQ15646 514 aaKnown RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 DUOXA2Q1HG44 320 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 IZUMO2Q6UXV1 221 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 GIMAP8Q8ND71 665 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 BEST2Q8NFU1 509 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 VPS50Q96JG6 964 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 AGBL1Q96MI9 1066 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 FAM111AQ96PZ2 611 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PLA2G12BQ9BX93 195 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 NPHP3-ACAD11A0A0J9YXS1 232 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 CCDC78A2IDD5 438 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 SNAP23O00161 211 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 ORC4O43929 436 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 ZNF189O75820 626 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 MOCS2O96007 188 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PAX7P23759 505 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 SFNP31947 248 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 FAM162AQ96A26 154 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 TRIM49D1C9J1S8 452 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 KCNMA1Q12791 1236 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 NFX1Q12986 1120 aaKnown RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 QRICH1Q2TAL8 776 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 IYDQ6PHW0 289 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PTPRN2Q92932 1015 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 MAGEB18Q96M61 343 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 FAM129AQ9BZQ8 928 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 E9PCH4 1651 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 ATP9AO75110 1047 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 MAPK7Q13164 816 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PDAP1Q13442 181 aaKnown RBP13.88□□□□□ -0.19
TCOF1-214ENST00000515035 SPDYAQ5MJ70 313 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PLEKHA7Q6IQ23 1121 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 TRIM69Q86WT6 500 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 TSPAN17Q96FV3 270 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 PAK5Q9P286 719 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 GABBR1Q9UBS5 961 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 ARHGEF40Q8TER5 1519 aa13.88□□□□□ -0.19
TCOF1-214ENST00000515035 AP3B1O00203 1094 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 TLR2O60603 784 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 CENPCQ03188 943 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 TMC5Q6UXY8 1006 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 KDELC2Q7Z4H8 507 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 WNK4Q96J92 1243 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 POLR3FQ9H1D9 316 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 A8MXQ7 604 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 PDGFRAP16234 1089 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 AP3M2P53677 418 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 PSMC5P62195 406 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 MROH9Q5TGP6 573 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 RCSD1Q6JBY9 416 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 TTC23LQ6PF05 361 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 SLC16A10Q8TF71 515 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 ANKRD27Q96NW4 1050 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 SPON2Q9BUD6 331 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 ARHGEF38Q9NXL2 777 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 RGS5O15539 181 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 NBNO60934 754 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 OTUD4Q01804 1114 aaKnown RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 LRRC74AQ0VAA2 488 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 STX5Q13190 355 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 STXBP2Q15833 593 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 PACS2Q86VP3 889 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 SRBD1Q8N5C6 995 aaKnown RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 RMDN1Q96DB5 314 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 ELMO2Q96JJ3 720 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 MAML3Q96JK9 1138 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 MRPL4Q9BYD3 311 aaKnown RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 WDR35Q9P2L0 1181 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 DFFAO00273 331 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 GSNP06396 782 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 RBP3P10745 1247 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 HOXD10P28358 340 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 ERVK-24P63145 666 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 KRR1Q13601 381 aaKnown RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 R3HDM1Q15032 1099 aaKnown RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 EDRF1Q3B7T1 1238 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 THEM5Q8N1Q8 247 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 ASIC4Q96FT7 647 aa13.87□□□□□ -0.19
TCOF1-214ENST00000515035 FAM84BQ96KN1 310 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-214ENST00000515035 MCEEQ96PE7 176 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms