RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ATXN10Q9UBB4 475 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 RIC1Q4ADV7 1423 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 EIF3DO15371 548 aaKnown RBP eCLIP13.78□□□□□ -0.2
TCOF1-213ENST00000514442 HLA-DRAP01903 254 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 PBX1P40424 430 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 AP3M2P53677 418 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 KRT17Q04695 432 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 ASPHQ12797 758 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 SPDYCQ5MJ68 293 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 APOBEC3HQ6NTF7 200 aaKnown RBP13.78□□□□□ -0.2
TCOF1-213ENST00000514442 GMCL1P1Q8NEA9 526 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 PHTF1Q9UMS5 762 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 TCHHQ07283 1943 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 EPHB1P54762 984 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 SLC34A1Q06495 639 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 GPS1Q13098 491 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 LRRC36Q1X8D7 754 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 MTMR8Q96EF0 704 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 PGM2Q96G03 612 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 MPP4Q96JB8 637 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 LRRC4BQ9NT99 713 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 PARVAQ9NVD7 372 aa13.78□□□□□ -0.2
TCOF1-213ENST00000514442 TRIM72Q6ZMU5 477 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 TLK1Q9UKI8 766 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 SUPT3HO75486 399 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 ARL4CP56559 192 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 CACNB2Q08289 660 aaPredicted RBP13.77□□□□□ -0.2
TCOF1-213ENST00000514442 ATF7IP2Q5U623 682 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 CYP2W1Q8TAV3 490 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 AFG1LQ8WV93 481 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 GPRASP2Q96D09 838 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 MMADHCQ9H3L0 296 aaPredicted RBP13.77□□□□□ -0.2
TCOF1-213ENST00000514442 AGPAT3Q9NRZ7 376 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 KIF1AQ12756 1690 aa13.77□□□□□ -0.2
TCOF1-213ENST00000514442 CES2O00748 559 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 FOXP2O15409 715 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SNX3O60493 162 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SLURP2P0DP57 97 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 CASP4P49662 377 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 ERFP50548 548 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 CDH6P55285 790 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 TMPRSS15P98073 1019 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM132DQ14C87 1099 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SYCP2LQ5T4T6 812 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 RAET1EQ8TD07 263 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 PCDHAC2Q9Y5I4 1007 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 IGSF9BQ9UPX0 1349 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 DPPA5A6NC42 116 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SLC26A4O43511 780 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 ENO1P06733 434 aaKnown RBP13.77□□□□□ -0.21
TCOF1-213ENST00000514442 PDGFRBP09619 1106 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 WEE2P0C1S8 567 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 TGFB2P61812 414 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 DACT2Q5SW24 774 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 TMCO4Q5TGY1 634 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SPOPLQ6IQ16 392 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 URGCPQ8TCY9 931 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SCFD2Q8WU76 684 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 SIK2Q9H0K1 926 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 REXO2Q9Y3B8 237 aaKnown RBP13.77□□□□□ -0.21
TCOF1-213ENST00000514442 MAFGO15525 162 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 DDNO94850 711 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-213ENST00000514442 CETPP11597 493 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 ITIH2P19823 946 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 NCALDP61601 193 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 EVX2Q03828 476 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 CATSPER1Q8NEC5 780 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 HSD3B7Q9H2F3 369 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 RANBP17Q9H2T7 1088 aaKnown RBP13.77□□□□□ -0.21
TCOF1-213ENST00000514442 RMI1Q9H9A7 625 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 CYP26B1Q9NR63 512 aa13.77□□□□□ -0.21
TCOF1-213ENST00000514442 PJA2O43164 708 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 KDM1AO60341 852 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 GRIN3BO60391 1043 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 MCF2P10911 925 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 DNAJC3Q13217 504 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 RARS2Q5T160 578 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 TTC13Q8NBP0 860 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 TPCN2Q8NHX9 752 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 ZNF560Q96MR9 790 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 MTO1Q9Y2Z2 717 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 C3P01024 1663 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 STRNO43815 780 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 KRT7P08729 469 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 RAB27AP51159 221 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 IZUMO2Q6UXV1 221 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 LRRC74BQ6ZQY2 392 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 MTBPQ96DY7 904 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 FAXDC2Q96IV6 333 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 ANKEF1Q9NU02 776 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 STAP1Q9ULZ2 295 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 TBX20Q9UMR3 447 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 WNT10BO00744 389 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 GPC4O75487 556 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 NPTXRO95502 500 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 KRT3P12035 628 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 HOXD10P28358 340 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 PTDSS1P48651 473 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 BCAR1P56945 870 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM117Q9H0C3 514 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms