RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CWH43Q9H720 699 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNHIT6Q9NWK9 470 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 STXBP5LQ9Y2K9 1186 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 TEX28O15482 410 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 CDH8P55286 799 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 GSCP56915 257 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 CDC42EP1Q00587 391 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 CYP27A1Q02318 531 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 DEUP1Q05D60 604 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 TMEM132DQ14C87 1099 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 ERCC6LQ2NKX8 1250 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 WDR72Q3MJ13 1102 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 MICALCLQ6ZW33 695 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 OR6B3Q8NGW1 331 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 TMEM209Q96SK2 561 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 RHOBTB2Q9BYZ6 727 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 FZD8Q9H461 694 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 RCOR1Q9UKL0 485 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 DNAH14Q0VDD8 3507 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 USP34Q70CQ2 3546 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 hCG_2014768A0A024R1R8 64 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 A0A1W2PPC1 479 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 KIF2AO00139 706 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CALCAP01258 141 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 DSC3Q14574 896 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 POSTNQ15063 836 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 PSMD5Q16401 504 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CCDC40Q4G0X9 1142 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 RASIP1Q5U651 963 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CES5AQ6NT32 575 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 FOXR1Q6PIV2 292 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 LINC01465Q8N7H1 131 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 RSAD2Q8WXG1 361 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 MRPL38Q96DV4 380 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 MCRS1Q96EZ8 462 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 PCMTD1Q96MG8 357 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 MRPL9Q9BYD2 267 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 ADAM7Q9H2U9 754 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CCDC195A0A1B0GUA6 201 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 KIF5CO60282 957 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 TBX10O75333 385 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 SEC31AO94979 1220 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 MAPTP10636 758 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 NR2F2P24468 414 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 ACTN2P35609 894 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CLCN2P51788 898 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 ADCY1Q08828 1119 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 GRASPQ7Z6J2 395 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 TADA2BQ86TJ2 420 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 FLCNQ8NFG4 579 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 OR5B17Q8NGF7 314 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 SMG7Q92540 1137 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 DNAJC19Q96DA6 116 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 COL25A1Q9BXS0 654 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CD248Q9HCU0 757 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 MAN1C1Q9NR34 630 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 STK17AQ9UEE5 414 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CTNND2Q9UQB3 1225 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 SMTNL1A8MU46 457 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 LSM1O15116 133 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 KIAA0754O94854 1291 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 LYPLA2O95372 231 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 EOMESO95936 686 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 HNRNPH1P31943 449 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 RAB27AP51159 221 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 DUSP4Q13115 394 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 TIGD5Q53EQ6 642 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 RNF187Q5TA31 235 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 RESP18Q5W5W9 173 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 SLC39A4Q6P5W5 647 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 TTC9BQ8N6N2 239 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 TRPC7Q9HCX4 862 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CHST12Q9NRB3 414 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 HSPBP1Q9NZL4 362 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 DNAI1Q9UI46 699 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 GTF3C4Q9UKN8 822 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 CAPN7Q9Y6W3 813 aa8.43□□□□□ -1.06
LIMCH1-219ENST00000514096 SPTLC1O15269 473 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 PPP6R2O75170 966 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 EZRP15311 586 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 GLUD2P49448 558 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 MPP3Q13368 585 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 TUSC3Q13454 348 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SMC1AQ14683 1233 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SETDB1Q15047 1291 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 WSCD1Q658N2 575 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CCDC121Q6ZUS5 278 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 TNMDQ9H2S6 317 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 MMADHCQ9H3L0 296 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CD320Q9NPF0 282 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 FAM49BQ9NUQ9 324 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ARHGAP28Q9P2N2 729 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 NUDT5Q9UKK9 219 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 BLOC1S6Q9UL45 172 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 TPX2Q9ULW0 747 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 EXOC7Q9UPT5 735 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 PPME1Q9Y570 386 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 OGTO15294 1046 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ATP2C2O75185 946 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 GLUD1P00367 558 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms